qiime2 q2-types issues - Githubissues

qiime2 / q2-types

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ENH: Adds FileDictMixin

#347 VinzentRisch opened 1 month ago
0
ENH: Add file dict Mixin for `Kraken2ReportDirectoryFormat`

#346 VinzentRisch opened 1 month ago
0
ENH: Adds new format `GenomeDataDirectoryFormat` with `genome_dict` function

#345 VinzentRisch closed 1 month ago
3
ENH: Add genome_dict functions to `GenesDirectoryFormat` and `ProteinsDirectoryFormat`.

#344 VinzentRisch closed 1 month ago
0
API: update test in response to qiime2#800 fix

#343 gregcaporaso closed 2 months ago
0
Refactor q2-types to avoid circular imports

#342 ebolyen closed 3 months ago
2
Refactor q2-types to avoid circular imports

#341 ebolyen closed 4 months ago
1
ENH: Added new type `FeatureTable[Normalized]`

#340 VinzentRisch closed 3 months ago
0
ENH: Adding new type called `FeatureTable[Normalized]`

#339 VinzentRisch opened 4 months ago
0
MAINT: refactor/clean up GenomeData types

#338 misialq closed 4 months ago
5
identifiers are being parsed as feature labels in various visualizations

#337 ebolyen opened 4 months ago
1
Use ConfigParser instead of SafeConfigParser

#336 athos-ribeiro closed 5 months ago
1
TEST: updating transformer tests that call format validation

#335 lizgehret closed 6 months ago
0
ENH: Migrated partition and collating actions from `q2-moshpit` to `q2-types`

#334 VinzentRisch closed 2 months ago
9
iteritems deprecation warning on merge_seqs

#333 lxsteiner closed 6 months ago
1
MAINT: Move partitioning and collating actions from q2-moshpit to q2-types

#332 VinzentRisch closed 2 months ago
0
IMP: allow biom tables to be imported as FeatureData[Sequence] via transformer from BIOMV210Format to DNAFASTAFormat

#331 colinvwood closed 6 months ago
0
add manifest formats to q2-types, and update throughout the shotgun distro to use those

#330 colinvwood closed 4 months ago
0
IMP: PacBio Phred Offset is Incorrectly Translated

#329 hagenjp closed 4 months ago
1
ENH: add `ProfileHMM[*]` semantic types

#328 Sann5 closed 5 months ago
8
ENH: add `ReferenceDB[HMMER]` semantic type

#327 Sann5 closed 5 months ago
0
ENH: Added new type `FeatureData[SequenceCharacteristics]` with semantic validator for property 'length'.

#326 VinzentRisch closed 6 months ago
3
ENH: add `FeatureData[SingleBowtie2Index]` and `FeatureData[AlignmentMap]`

#325 misialq closed 6 months ago
1
ENH: Add new type `FeatureData[SequenceCharacteristics]`

#324 VinzentRisch closed 6 months ago
0
MAINT: Updates for new pandas API

#323 Oddant1 closed 6 months ago
0
MAINT: adjust regex for genome data semantic types

#322 Sann5 closed 6 months ago
3
MAINT: Implement a validation method for the `OrthologFileFmt`

#321 Sann5 opened 7 months ago
2
ENH: Semantic type for HMMER database

#320 Sann5 closed 6 months ago
0
MAINT: refactor names of variables in `reference_db/tests/test_format.py`

#319 Sann5 closed 6 months ago
3
ENH: add annotations-to-metadata transformer

#318 misialq closed 7 months ago
2
BUG: fix circular imports in bowtie/contig

#317 ebolyen closed 8 months ago
1
Add to top level __init__

#316 Oddant1 closed 8 months ago
0
FEAT: Importing sequence data from BIOM files

#315 peterjc closed 6 months ago
5
ENH: add FeatureData[Contig] type

#314 misialq closed 8 months ago
0
MAINT: typo in `feature_data_mag/__init__.py`

#313 Sann5 closed 6 months ago
2
ENH: Semantic Type for `fetch-busco-db` output

#312 Sann5 closed 6 months ago
3
ENH: add sample_dict method to MultiFASTADirectoryFormat

#311 misialq closed 8 months ago
2
Patch to work with Pandas 2.x

#310 tillea closed 6 months ago
1
IMP: migrate types/formats/transformers from types-genomics

#309 Oddant1 closed 9 months ago
7
MAINT: Migrate q2-types-genomics types/formats/transformers into q2-types

#308 lizgehret closed 9 months ago
0
MAINT: migrate q2-demux types/formats/transformers to q2-types for more general access

#307 hagenjp closed 6 months ago
4
IMP: Expand alphabet for ProteinFASTAFormat

#306 Sann5 closed 11 months ago
6
CI:Updates to ci-dev workflow

#305 hagenjp closed 1 year ago
0
Blast6 file empty

#304 fabio-marcelo closed 1 year ago
1
NEW: adds FeatureMap from q2-types-genomics

#303 lizgehret closed 1 year ago
2
Migrate FeatureMap from q2-types-genomics to q2-types

#298 wasade closed 1 year ago
0
NEW: adds transformer to support writing ImmutableMetadata to file

#297 gregcaporaso closed 1 year ago
1
add variant type for q2-moshpit

#296 gregcaporaso closed 1 year ago
0
CI: add additional tests in commands section

#295 colinvwood closed 1 year ago
0
BUG: Support numeric manifest ids by ensuring they will be strings wh…

#294 Oddant1 closed 1 year ago
0