-
```
Added a sub project related to file loading.
It uses a different method of loading files than bParse.
Instead of recursively testing file to memory structures for
differences it builds an offset…
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Same as #253,
```
....
2024-08-21 11:48:38 makeGraph.py:l88 INFO Computing the neighbors graph...
Processing O77D5.gff3: 100%|███████████████████████████████████████████████████████████████████…
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When running very large sample BAMs through call-sSNV, it likely that the pipeline would fail because of default resource configurations.
Although the `base_resouce_update` function in `template.co…
-
```
Added a sub project related to file loading.
It uses a different method of loading files than bParse.
Instead of recursively testing file to memory structures for
differences it builds an offset…
-
```
Added a sub project related to file loading.
It uses a different method of loading files than bParse.
Instead of recursively testing file to memory structures for
differences it builds an offset…
-
```
Added a sub project related to file loading.
It uses a different method of loading files than bParse.
Instead of recursively testing file to memory structures for
differences it builds an offset…
-
-
Some newer [Family Tree DNA](https://www.familytreedna.com) famfinder files seem to have SNPs assigned to chromosome 0. Similar to `SNPs._assign_par_snps`, use the [RefSNP](https://api.ncbi.nlm.nih.go…
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Hello, I get the following error trying to run Phylophlan.
phylophlan_write_config_file -o config_file_3 --map_dna diamond --map_aa diamond --db_aa diamond -d a --msa mafft --trim trimal --tree1 ra…
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Whole-genome sequencing of S. paradoxus mutation accumulation lines
DNA extracted using Zymo YeaSTAR Genomic DNA kit
Libraries prepped using homemade protocol (no kit, can find out more info if ne…