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uclahs-cds
/
pipeline-call-sSNV
A Nextflow pipeline to identify the somatic single nucleotide variants (sSNVs) by comparing a pair of tumor/normal samples.
https://uclahs-cds.github.io/pipeline-call-sSNV/
GNU General Public License v2.0
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Sfitz fix single tool runs
#325
sorelfitzgibbon
closed
6 days ago
0
Bump external/pipeline-Nextflow-config from `23b7b4e` to `da0541d` in the pipeline-submodules group
#324
dependabot[bot]
opened
3 weeks ago
1
Update versions for five tools
#323
sorelfitzgibbon
closed
2 weeks ago
4
Add nextflow.config to release management process
#322
nwiltsie
closed
4 weeks ago
0
Bump external/pipeline-Nextflow-module from `1cfa9fa` to `b1d7a78` in the pipeline-submodules group
#321
dependabot[bot]
closed
1 month ago
2
Update cluster reference paths
#320
nwiltsie
closed
1 month ago
1
fix check for panel of normals and add in log
#319
sorelfitzgibbon
closed
1 month ago
4
Bump uclahs-cds/tool-PlantUML-action from 1.0.0 to 1.0.1
#318
dependabot[bot]
closed
1 month ago
0
Add release management workflows
#317
nwiltsie
closed
1 month ago
0
Update BCFtools to v1.21
#316
sorelfitzgibbon
closed
2 weeks ago
0
update MuSE 2.0.4 -> 2.1.1
#315
sorelfitzgibbon
closed
2 weeks ago
0
use setup_process_afterscript
#314
sorelfitzgibbon
closed
4 weeks ago
9
single pipeline runs from BAM are currently broken
#313
sorelfitzgibbon
closed
6 days ago
0
add storing of parameters
#312
sorelfitzgibbon
closed
1 month ago
0
Update GATK to v4.6.0.0
#311
sorelfitzgibbon
closed
2 weeks ago
0
Add VAF stripplot
#310
yashpatel6
closed
2 months ago
2
Bump the pipeline-submodules group across 1 directory with 2 updates
#309
dependabot[bot]
closed
1 month ago
1
running without a `panel of normals` now elicits a WARNING
#308
sorelfitzgibbon
closed
1 month ago
1
Use `store_object_as_json` to store parameters
#307
nwiltsie
closed
1 month ago
0
Bump the pipeline-submodules group across 1 directory with 2 updates
#306
dependabot[bot]
closed
2 months ago
1
Add missing processes in SomaticSniper to resource configs
#305
tyamaguchi-ucla
opened
4 months ago
2
Bump the pipeline-submodules group across 1 directory with 2 updates
#304
dependabot[bot]
closed
4 months ago
1
Bump the pipeline-submodules group with 2 updates
#303
dependabot[bot]
closed
5 months ago
1
Update dependabot to group common submodules
#302
nwiltsie
closed
5 months ago
0
Use `methods.setup_process_afterscript()` for process logs
#301
nwiltsie
closed
4 weeks ago
0
update M64 resources
#300
sorelfitzgibbon
closed
4 months ago
5
Bump external/pipeline-Nextflow-module from `4597ebc` to `ef40c10`
#299
dependabot[bot]
closed
5 months ago
0
Bump external/pipeline-Nextflow-config from `fae7c33` to `be1eaf5`
#298
dependabot[bot]
closed
5 months ago
2
Create separate workflows for each input type
#296
sorelfitzgibbon
opened
6 months ago
0
Bump external/pipeline-Nextflow-module from `4597ebc` to `ef40c10`
#295
dependabot[bot]
closed
6 months ago
0
Bump external/pipeline-Nextflow-config from `795384d` to `bc3f67e`
#294
dependabot[bot]
closed
6 months ago
1
add panel of normals
#293
zhuchcn
closed
6 months ago
2
Bump external/pipeline-Nextflow-config from `795384d` to `e703579`
#292
dependabot[bot]
closed
6 months ago
1
Release 8.1.0
#291
sorelfitzgibbon
closed
6 months ago
3
Bump external/pipeline-Nextflow-module from `9db08f0` to `4597ebc`
#290
dependabot[bot]
closed
6 months ago
4
update resource allocations
#289
sorelfitzgibbon
closed
6 months ago
10
Add example doc with CPU/Mem resources for very large samples
#288
Faizal-Eeman
opened
6 months ago
8
Upgrade to latest static analysis Action
#287
nwiltsie
closed
6 months ago
0
Update contamination table instructions in README
#286
sorelfitzgibbon
opened
6 months ago
0
Additional Benchmarking to be added to README?
#285
sorelfitzgibbon
opened
7 months ago
1
Bump external/pipeline-Nextflow-config from `3ec7186` to `af6a606`
#284
dependabot[bot]
closed
6 months ago
5
Update repository description to match standard
#283
nwiltsie
opened
7 months ago
0
Implement refactored Nextflow test workflows
#282
nwiltsie
closed
7 months ago
0
Re-enable testing workflow after breaking changes
#281
nwiltsie
closed
7 months ago
0
Grant specific permissions to Nextflow tests workflow
#280
nwiltsie
closed
8 months ago
0
Bump external/pipeline-Nextflow-config from `3ec7186` to `f3448ac`
#279
dependabot[bot]
closed
7 months ago
12
standardize input structure
#278
sorelfitzgibbon
opened
8 months ago
1
Add F32 configtest
#277
sorelfitzgibbon
closed
8 months ago
0
Backfill documentation for existing releases
#276
nwiltsie
closed
8 months ago
1
Add new standard pipeline workflows
#275
nwiltsie
closed
8 months ago
0
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