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Redmine bug No 1999, 18.05.2006
> From Marc Colosimo:
> I'll repeat my previous posting to bugzilla so that it will stick out more. I've created a new frame translation method similar to `six_fra…
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I tried to extracted the cds sequences from the gff file.
```bash
gffread -g chm13.draft_v1.1.fasta -x cds.fa chm13.draft_v1.1.gene_annotation.v4.gff3
```
however, when trying to translate the c…
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### Publication and Data Information
Refer here for Pistacia transcriptome assembly. This issue will pertain only to the loading to the live site.
https://github.com/mestato/statonlabprivate/wiki/Pi…
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## Expected Behavior
Nt database indexed
## Current Behavior
Nt database index never-ending
## Steps to Reproduce (for bugs)
```
mmseqs createdb nt.fa nt -v 3
mmseqs createtaxdb nt tmp --threa…
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From: Anne Carpenter
Date: Fri, Dec 1, 2023 at 2:44 PM
Hi Ardigen/Ksilink,
Using this attached plot from Ardigen of the top 25 most anti-correlated pairs, I saw MYT1-RNF41.
So, I found someon…
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Hi Martin and Milot. Thanks for the nice software. So far it's working well for my applications.
## Context
Not a bug or problem but a use question. Sorry for opening an issue... Let me know if th…
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>hundreds or thousands of “extra” genes per genome,
but black box is black box
1)
for example
PGAP report 434 genes on plasmid
https://www.ncbi.nlm.nih.gov/protein?LinkName=nuccore_protein&fr…
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### Discussed in https://github.com/GMOD/jbrowse-components/discussions/4598
Originally posted by **Thys3Potgieter** October 10, 2024
Dear community
I am trying to visualize blastn results …
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It seems that sending an empty design thru OpenROAD flow script:
```
module noop(clk);
input clk;
wire clk;
endmodule
```
makes GPL error out with a stacktrace:
```
Stack trace:
0# 0x00…
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As mentioned in the preconfig.R we nee
> Abolute path to a file containing a list of the genes that will be analyzed.
> All the genes in the list must be represented by gene models of the same name
…