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This is more systemic issue that I wanted to bring up. In cell biology the process in which one protein regulates the _amount_ of another protein and the process in which one protein regulates the _ac…
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**Background**: While the network visualization module in cBioPortal is a powerful exploration tool, most biologists are more comfortable with the kind of simplified, curated pathway diagrams that are…
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@jchodera, @swails and I are working on converting Charmm forcefield files to ffxml using ParmEd here:
https://github.com/pandegroup/openmm/issues/1281 I'm opening this issue to discuss how we should …
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Name: amyloid-beta complex
Def: Protein complex involved in modulation of signaling and synaptic function in the brain, predominantly in the cerebral cortex and hippocampus. Forms dimers and multim…
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Human SMC1a is annotated to
mRNA splicing, via spliceosome
Reactome TAS. Can this be deleted, It doesn't have a role in splicing AFAIK
(I 'll put this one through protein2GO, but I don't think t…
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Are these equivalent?
GO:0050983 - deoxyhypusine biosynthetic process from spermidine
The chemical reactions resulting in the formation of deoxyhypusine from spermidine by the enzyme [eIF-5A]-deoxyhyp…
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Currently the view/proj matrices as exposed in the API and the spec recommends to use them unaltered. Until now three.js was creating the camera `viewMatrix` itself, but there's an WIP issue (https://…
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Background
An RDF representation is needed for BEL, version 2.0. This work should include design, documentation, and RDF schema triples (_rdfs_) required to encode BEL, version 2.0 concepts as triple…
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Hi - attached is a proposal with some new divisions for under 'protein modification' - basically co-translational and post-translational. We also have pre-translational, but this is called 'charged am…
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I've only looked at a couple of sessions that have modification annotations, but both times I saw this:
"Error for post_translational_modification: couldn't read annotations from the server - please …
mah11 updated
8 years ago