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Hi, I was wondering is there an easy way to select the peaks only in the promoter region (+-500bp of TSS) of a certain gene? instead of showing all the peaks across all the cell-types ?
can I just ad…
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Dear team,
thanks for your brilliant work.
And I want to get the linked genes of all cCREs. I see that I can get these genes by graphql API. Follow your description, I learn how to use graphql que…
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Dear all,
Thanks for your brilliant job!
I am interested in running bash scripts to get the mouse cCRE-gene pairs. Because in this page I only found the human pairs, how can I get the mouse cCRE-gen…
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Dear TADA team,
I'm having some problems with the use of the function: "predict variants"
I followed two different approaches:
A) I used data available from the folder "tests" and I ran the c…
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Following on from #16603 I would like to request:
1. chromatin looping
is_a ds_DNA loop formation
is_a chromatin remodelling
2. transcriptional activation by chromatin promoter-enhancer loop…
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Dear all,
The proposal has been made to obsolete
- GO:0090579 dsDNA loop formation
- GO:0090202 gene looping
- GO:0071733 transcriptional activation by promoter-enhancer looping
- GO:00902…
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A discussed in https://github.com/geneontology/go-ontology/issues/20791
I will create a new term, transvection
* Child of 'regulation of gene expression, epigenetic'
* Def: Regulation of transcr…
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I'm currently trying to run predict.py. I have HiC in BAMPE format in one file. It seems the code is trying to look for files per chromosome rather than a single file?
Command:
`python /home/cjr7…
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HI,
I am trying to catchem' all with the FusionCatcher Dataset + Arriba:
https://github.com/ndaniel/fusioncatcher/tree/master/test
I tried with the following command line arguments:
```
STAR …
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Hi,
I am trying to test marvel with the test_input file but could not get the ".ngz " result and summary result, and didn't have anything error messages, but with a lot of log messages related with R…