weng-lab SCREEN issues - Githubissues

weng-lab / SCREEN

MIT License

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How to download all cCREs by cell-type

#221 agduncan94 opened 5 months ago
1
Unable to find some HG38 ENCODE cCREs from UCSC table browser in SCREEN v3

#220 hchetia opened 5 months ago
0
EN-TEx cCRE Decoration Matrix version

#219 caofan opened 6 months ago
0
Problem when downloading cCREs active in human primary cells and tissues

#218 SaraValsoni opened 9 months ago
4
Bump semver from 5.7.1 to 5.7.2 in /website/ui

#217 dependabot[bot] opened 1 year ago
0
Quick start list is not filtered by letter entered

#215 jordanvelezbomba opened 1 year ago
0
When uploading a bedfile for intersection there is a bad redirect

#214 jordanvelezbomba opened 1 year ago
0
Color schemes are inconsistent

#213 jordanvelezbomba opened 1 year ago
0
Partially obscured figure because of "Courtesy of ENCODE" text

#212 jordanvelezbomba opened 1 year ago
0
Bar plot if cutoff on the edges

#211 jordanvelezbomba opened 1 year ago
0
Can we get a new logo? Where is the logo from? Why isn’t the logo visible on the homepage or in the header?

#209 jordanvelezbomba opened 1 year ago
0
Could have one big table where you can filter the data down by which z-score data is available.

#208 jordanvelezbomba opened 1 year ago
0
In Specific Biosamples Tab

#207 jordanvelezbomba opened 1 year ago
0
Search Results Search Box: Does not autofill like the homepage.

#206 jordanvelezbomba opened 1 year ago
0
I probably just don't understand how SCREEN is actually used, but why is the Genome Browser view shown first and not the Table View?

#205 jordanvelezbomba opened 1 year ago
0
“Tissue of Origin” and the Download button need to be aligned better.

#204 jordanvelezbomba opened 1 year ago
0
I think the filter boxes should be moved around to be more visually appealing

#203 jordanvelezbomba opened 1 year ago
0
The TSV downloads in “Biosample Types” and Cellular Components are empty.

#202 jordanvelezbomba opened 1 year ago
0
Sometimes tissues with the same color are next to each other, which could be confusing. How is it decided which tissues get which color?

#201 jordanvelezbomba opened 1 year ago
0
Maybe we can make these filters collapsable or optionally hidden in some way?

#200 jordanvelezbomba opened 1 year ago
0
Need that lil hand to show up when hovering over a slider endpoint to make it feel grabbable.

#199 jordanvelezbomba opened 1 year ago
0
It is not obvious that you can click on a biosample cell type to filter cCRE results.

#198 jordanvelezbomba opened 1 year ago
0
The coordinates filter has bad scaling for using the slider.

#197 jordanvelezbomba opened 1 year ago
0
Should be some way to hover over cart and empty it

#196 jordanvelezbomba opened 1 year ago
0
I think the cart should be rebranded as a users “collection” or something.

#195 jordanvelezbomba opened 1 year ago
0
It would be nice to have a selector box to the left of the cCREs

#194 jordanvelezbomba opened 1 year ago
0
Why doesn’t the cursor turn into the little hand on MouseOver on the cart button?

#193 jordanvelezbomba opened 1 year ago
0
THE COLORS

#192 jordanvelezbomba opened 1 year ago
0
Is the hover info popup for “accession” correct?

#191 jordanvelezbomba opened 1 year ago
0
The .json download should be named so it doesn’t just download as “test.json”

#190 jordanvelezbomba opened 1 year ago
0
.Bed download - Fixed in V4?

#189 jordanvelezbomba opened 1 year ago
0
The key/legend at the bottom of the table view is confusing

#188 jordanvelezbomba opened 1 year ago
0
We should make the table view the default. It is not that useful to have the Genome Browser View displayed first and is just an extra click for most users.

#187 jordanvelezbomba opened 1 year ago
0
Why was the default empty search chosen to be the one it is?

#186 jordanvelezbomba opened 1 year ago
0
Homepage Search Box: Navigating using arrows doesn’t highlight the option, though it correctly autofills

#185 jordanvelezbomba opened 1 year ago
0
Information on how to properly cite is hidden behind the cCRE versions “i” button, why not have a “How to Cite” page available in the header?

#184 jordanvelezbomba opened 1 year ago
0
When you’re on the homepage and click the “i” to view old cCRE annotations, the website title disappears, and a new tab appears out of nowhere.

#183 jordanvelezbomba opened 1 year ago
0
Homepage (and throughout): Need better primary/secondary/tertiary element hierarchy.

#182 jordanvelezbomba opened 1 year ago
0
Information (i) hover popups need to be formatted better in some locations, are too long

#181 jordanvelezbomba opened 1 year ago
0
Accessibility: Font size defined in px not rem

#180 jordanvelezbomba opened 1 year ago
0
Major issues with UI scaling on viewport size changes. Basically unusable on mobile

#179 jordanvelezbomba opened 1 year ago
0
The text “SCREEN Registry Vx” in the header should all link back to the homepage.

#178 jordanvelezbomba opened 1 year ago
0
Website pagination should be figured out so that the back button works as a user thinks it should.

#177 jordanvelezbomba opened 1 year ago
0
Need a better site header, with links to downloads, versions, tutorials, etc. that stays static when moving through the site.

#176 jordanvelezbomba opened 1 year ago
0
Need to create a more unified feel between the landing search input page and the results page

#175 jordanvelezbomba opened 1 year ago
0
Very confusing how sometimes tabs just appear.

#174 jordanvelezbomba opened 1 year ago
0
Link to SCREEN v1 broken

#173 jpfisher72 opened 1 year ago
0
Bump json5 from 0.5.1 to 1.0.2 in /website/ui

#172 dependabot[bot] opened 1 year ago
0
Links to papers in gwas all broken due to it appending the author name not the paper ID to the URL

#171 jpfisher72 opened 1 year ago
0
Can not access API host

#170 nnoll opened 1 year ago
0