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Just wondering if there are any plans to develop support for HG38?
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Hi, thanks for your previous responses a while back.
I am now trying to use cellSNP/Vireo with a SAM/BAM output file from `salmon alevin` instead of Cell Ranger, and wanted to see if this would be …
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Hi!
Sorry if this is not the right place to ask this, or if my question is not specific enough:
I'm looking around for a solution to work with genomic data, primarily VCFs, and Tile_DB struck me as …
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What is the difference (if there is one), and what is our model actually about?
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Hi Whatshap team,
I am trying to phase haplotypes on some tetraploid potato datasets, but copy-number variation is widely distributed throughout the genome and thus I'm having issues running whatshap…
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**Describe the bug**
This issue might be related to issue https://github.com/openvar/variantValidator/issues/151. Please merge if appropriate.
A user enquired about being unable to validate the de…
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# Bug description
Running SVIM on some long read PacBio bam files, I get an error from tabix, that the resulting sequences are unsorted.
```bash
[E::hts_idx_push] Unsorted positions on sequence #1:…
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Hi! Thank you so much for providing this implementation and documentations. I have been looking for the pytorch implementation of enformer for a while.
When I run the provided code `test_pretraine…
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Alister and Edmon should identify an appropriate workshop or a mid-key conference where we could write up and present the results. I do not think we have material for anything ambitious, but it would …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/trichelab/bamSliceR
Confirm the following by edit…