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Hi,
Recently I tried to use Giotto Suite to do single cell RNA seq data analysis. I obtained the data from one published paper, but my analysis results are not consistent with the figures in the pa…
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Is there a function that can see overlapping genes from list of 5-6 genes that I extract from giotto?
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Hi, I used Giotto Suite to do visium integration analysis between two spatial datasets, and I encountered an error as followed:
When I ran the code:
spatPlot2D(gobject = testcombo, cell_color = …
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Hi,
Recently I tried to use Giotto Suite package to analyze 10X Single Cell RNA Sequencing data. After cell type annotation, I want to compare the pathway difference between two specific cell types…
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@david-a-wheeler [expressed his wish](https://github.com/metamath/set.mm/pull/3074#issuecomment-1450870324) for LaTeX checks in the CI.
@GinoGiotto [suggested](https://github.com/metamath/set.mm/pu…
tirix updated
12 months ago
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Hello,
Is it possible to convert a Giotto object to a Seurat object and keep all of the downstream analysis information currently stored in the Giotto object?
Thank you in advance.
Best,
Mich…
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Hi,
I observed that you have updated the codes. However, some problems have not been solved yet.
```
1) In "Codes/Deconvolution/Stereoscope_pipeline.py", Line 51: change "scvi.data.setup_anndata" …
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Merchant name: Claudio Pasinetti
Country: Italy
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@gcyuan @RubD @mattobny
Hello Giotto team,
We run **HVFcalculate** using method = "**cov_groups**" for a set of 12 tumor samples. Please see below an example of the command line:
_F1_normal…