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Hi all,
Thanks for the great work!
I was trying to use your getDORCScores function to obtain the DORC score based on the modified output of Seurat LinkPeaks function. I use Seurat Object's ATAC …
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Hi Dictys team,
Congrats on this package, it looks really promising! I saw it in your poster at the Single Cell Biology in Hinxton.
I have a 10X multiome dataset for which I would like to model …
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An updated reasoner-validator has been deployed to the beta version of the ARAX UI. BTE (and most teams) are showing errors. Example links are below, more info can be found by mousing over and click…
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Hi,
I have a 10x multiomics (RNA+ATAC) experiment, and am trying to use `chromap` for the ATAC portion and associate it with RNA analyzed by `alevin-fry`. My ATAC files are in the format with `R1`, `…
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Hi Eduardo,
I have a great number of samples and i used SUPPA2 to get PSI per isoform (psiPerIsoform).
My idea , a part to run a differential splicing analysis using SUPPA2, is to keep the matr…
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From 8/3 and 8/10 lab meetings on Translator
with_total Implemented in [this PR](https://github.com/newgene/biothings.api/pull/52)
Yao: deployed for biothings API ("pending APIs") at biothings.nca…
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## Github Repo Instructions
- [x] 1. If user wants to run beatAML and runs this comment : `Rscript src/model_DR.R beatAML ./data ./results 1 10` this error returns:
#TODO add this line to clar…
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Multiomics EHR risk kp api needs to have 2.4.8 since it has new predicates it needs to use
Process to update biolink (mostly @tokebe, some me)
* [x] Dev makes PR in biolink-model repo
* [x] CX Re…
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Dear Tim,
An error occured with `CreateChromatinAssay` and `seqlevels` when I was trying out the vignette on SNARE-seq. I was wondering whether there's any setting issues? (good with vignette on 10x…