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Some FASTA sequences break the code (Irrespective of the size).
So for example, there is a file with n seqs, when it reaches this particular seq 'X', the code breaks and displays segmentation fault.…
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Hi all,
I am trying to install metAMOS on CentOS 6.5, after installing all the program and dependencies guide suggesting to check if the program is installed well. To do that, i was asked to run run_…
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### Subject
[Flow] for any util, flow Makefile, or flow script issues.
### Describe the bug
results/sky130hd/gcd/base/6_1_merged.gds only contains pin geometry, it's missing the net geometry for de…
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[Thu Dec 31 12:50:05 2020] Running: /home/phixgen/MinPath/MinPath.py -any jk_2/data/cds.gene2ec.mapping.txt -map ec2path -report jk_2/data/cds.gene2ec.minpath -details jk_2/data/cds.gene2ec.minpath.de…
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Hi there,
I have two issues trying to get my data to run. I am running version 2.0.4 on an HPC:
Issue 1: I gave my job 71 hours but it did not get past the Kofam stage (see below).
```
20…
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I saw the "Open Questions" section and decided to answer them in case anyone was still interested, there are definitely more avenues to explore in this project and they could be of huge benefit to res…
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Dear Soeding lab members,
I was trying to use mmseqs for tblastn-like analysis.
With a given aa query db and nt targetdb, I have results of blastall and blast+ giving approx 11k and 14k hits (evalue…
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After running FeGenie with a reference database (nr.dmnd) I get the error shown below.
As an output I get the complete FeGenie-summary.csv and an empty file FeGenie-summary-altered.csv.
I think I…
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Hi,
I am using the following call to spray-and-pray.py:
`
spray-and-pray.py -t 20 --euk --meta --spades -bam ${prefix}.pairedReads2assembly.sorted.bam -g $file -ref /home/liam/data/nr/nr.dmnd -ou…
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### Subject
[Flow] for any util, flow Makefile, or flow script issues.
### Describe the bug
In the configuration of the platform, only one synthesis buff cell and one CTS buff cell are written. May…