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cruizperez
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MicrobeAnnotator
Pipeline for metabolic annotation of microbial genomes
Artistic License 2.0
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[Question] How are modules determined to be bifurcating or not?
#97
jolespin
opened
1 month ago
0
An auxiliary script that might help condensing pathway tab files
#96
AhmedElsherbini
opened
3 months ago
2
Fixes for two critical bugs in KOfam annotation step
#95
ivagljiva
closed
4 months ago
0
Critical bugs in KOfam annotation step
#94
ivagljiva
closed
4 months ago
4
added --barplot_threshold and --heatmap_threshold parameters
#93
Louis-MG
opened
5 months ago
1
Is there a branch that offers a way to change module completeness threshold ?
#92
Louis-MG
opened
5 months ago
1
Trembl file not formated correctly
#91
Louis-MG
closed
5 months ago
1
How is completeness calculated?
#90
Sidduppal
opened
10 months ago
0
Add crawler
#89
cruizperez
closed
10 months ago
0
Added logger and unit tests
#88
cruizperez
closed
10 months ago
0
Added configs
#87
cruizperez
closed
10 months ago
0
Database download error on step 11
#86
Sidduppal
opened
10 months ago
3
KeyError : 'K26481'
#85
Naturalist1986
opened
10 months ago
0
Want to download all the required databases manually
#84
bloomarun
opened
11 months ago
1
Update conversion_database_creator.py
#83
Kekananen
closed
1 week ago
2
Error with HMM
#82
mscarbor
closed
1 year ago
1
Can this work with microeukaryotic genomes if genes are provided?
#81
jolespin
opened
1 year ago
0
sqlite3.OperationalError: database is locked
#80
ChingHsiangChin
opened
1 year ago
0
Error，‘Connection refuse’d and ‘550 Failed to change directory’ during step 13, please help me
#79
XingshengYang
closed
1 year ago
2
FTP error while downloading database ftplib.error_perm: 550 Failed to change directory.
#78
saras224
closed
1 week ago
1
urllib.error.URLError: Downloading SwissProt Fasta files
#77
narib
opened
1 year ago
2
Workarounds for bad conda installation
#76
morgansobol
opened
1 year ago
1
database installation error
#75
saras224
opened
1 year ago
1
Microbeannotator database download error..
#74
sowptika
opened
1 year ago
1
why error ? i DB install --light
#73
kdyoung100
opened
1 year ago
1
conda config --add channels cruizperez: should be append
#72
ERRMoody
opened
1 year ago
2
Is it possible to use MicrobeAnnotator for entire assemblies rather than genome
#71
rzmabdallah
opened
1 year ago
1
kofam results are very different with results of local kofamscan or online KofamKOALA
#70
WangLab-SCSIO
opened
1 year ago
2
Step 3 - Permission error
#69
Sam-J-1
opened
1 year ago
0
Annotated, Hypothetical, and Unannotated classification result of the query
#68
BinhongLiu
opened
1 year ago
0
error indexError: list index out of range - Step 12
#67
jayramr
opened
1 year ago
1
MicrobeAnnotator running error
#66
17863952296
opened
1 year ago
2
Changing Search (and DB creation) method
#65
Ahmed-Shibl
opened
1 year ago
0
I have a question
#64
17863952296
closed
1 year ago
0
During step13 there is an error. please help me
#63
suppakoko
closed
1 week ago
5
DB builder error at step 11-- assertion error?
#62
natashagriffin
opened
1 year ago
1
How much space is actually needed?
#61
jackweav
opened
1 year ago
0
ko_mapper.py
#60
mattoslmp
opened
1 year ago
3
content of MicrobeAnnotator_DB directory
#59
tbazilegith
opened
1 year ago
0
Misc - Added init files to folder structure.
#58
cruizperez
closed
1 year ago
1
Step 4 - permissionError
#57
Yoon-Mi-CHOI
opened
2 years ago
1
DB download error
#56
kalonji08
opened
2 years ago
1
Error while searching proteins against Swissprot
#55
Aluminio-visto
opened
2 years ago
3
sqlite3 error
#54
PengfanZhang
opened
2 years ago
3
Fatal exception while parsing HMM profile metadata
#53
galtoledano
opened
2 years ago
3
MicrobeAnnotator Installation Warning
#52
asbhattacharjee
opened
2 years ago
2
database generation factorisation :: of
#51
EricDeveaud
closed
2 years ago
1
Shifter HPC tmp directory overwritten
#50
nlmjacquemin
closed
2 years ago
0
Step 13, db_builder failed
#49
Chronona
closed
2 years ago
0
CRC check failed when building the RefSeq databse
#48
thkuo
opened
2 years ago
4
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