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`get_regulons_AUC` is not able to read the matrix written by `add_scenic_regulons_auc_matrix`.
I think the problem is that `get_regulons_AUC` uses the argument `column.attr.name="MotifRegulonsAUC"`…
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Hi @All,
The error occurred when runing below code,
library(SCENIC)
library(SCopeLoomR)
loom
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Hi,
I have a problem in the first step of calculates_csi:
```
> regulonAUC regulons_csi str(regulonAUC)
Formal class 'aucellResults' [package "AUCell"] with 6 slots
..@ nGenesDetected : nu…
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I am repeating [this tutorial](https://github.com/aertslab/SCENICprotocol/blob/master/notebooks/SCENIC%20Protocol%20-%20Case%20study%20-%20Cancer%20data%20sets.ipynb) on my own human single-cell gen…
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My question is given the TCGA regulons is located in deprecated branch https://github.com/saezlab/dorothea/blob/deprecated/data/TFregulons/consensus/Robjects_VIPERformat/pancancer/TOP10_pancancer_vi…
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I tried to do this using the export2scope from SCENIC but it didn't work so I decided to go through SCopeLoomR.
Following the vignette, I am getting the following error:
```
> add_scenic_regulo…
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Hi VSN team :)!
I have noticed that when running SCENIC in the pipeline, the GRNBoost modules adjency table only contains the columns TF-target-importance. For some analyses afterwards, it is inter…
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https://mp.weixin.qq.com/s/tZYRW0qVIWOyYC77aZkxLA
ixxmu updated
3 years ago
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I noticed that in the list of regulons produced by df2regulons, you can see a list of genes for each regulon (the target genes), accompanied by a "weight." What do these weights represent? Are they …
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Breaks-related error during runSCENIC_3_scoreCells:
````
> runSCENIC_3_scoreCells(scenicOptions, exprMat)
14:21 Step 3. Analyzing the network activity in each individual cell
Number of regul…