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**The issue**
I have been attempting to get into the Biopython contributor community and learn to develop, but am running into issues while installing Biopython. Namely, I cannot get the tests to r…
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This is fairly new, having run ColabFold 1.5.3 (the workhorse AF2 w/ MMseqs version) quite well last night, but the first job this morning crashed at the "Run Prediction" stage with the following erro…
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Dear Prof. @spond,
Please see below:
```
hivtrace -i TEST.FASTA -a resolve -r HXB2_prrt -t .015 -m 500 -g .05 -c
Traceback (most recent call last):
File "/Users/liam/opt/miniconda3/bin/be…
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(This was already mentioned in https://github.com/kblin/ncbi-acc-download/issues/13#issuecomment-531677362, but I think it is better to have a separate issue.)
`ncbi-acc-download --format fasta --r…
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Hello! I have encountered few issues while trying to run ` seroba` through a `conda` environment. One is the same reported in issue #59 with `biopython` and the other one is with `bowtie2`. In the la…
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With one of the file sets I'm using in the analysis, I get this error:
`/software/python/Python2.7/lib/python2.7/site-packages/Bio/Seq.py:2071: BiopythonWarning: Partial codon, len(sequence) not a …
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Make sure the cwl pipeline can run on bc-node03
install missing dependencies as needed.
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Hi
I am very much interested in using Mobi 2.0 on my web server, however, the link to download the DSSP v. 2.2.1 seems not to be working anymore. Could you please provide me with the exact version …
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Go through different code and preform work cited where necessary in a md or rst document.
Comment code with Work Cited Index numbers.
Do research to see if there is a standard way to do works cited …
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```
by domain::unique_id, but also for complexes
Must consider transformations, as this will be done for all models.
Write Tests.
```
Original issue reported on code.google.com by `chad.a.davis@gmai…