sanger-pathogens seroba issues

sanger-pathogens / seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads

https://sanger-pathogens.github.io/seroba/

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issues

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errors during installation via conda/mamba

#78 ulrichmarkus opened 7 months ago
2
Run Seroba with PneumoCat v1.2.1??

#77 arif-tanmoy opened 11 months ago
2
Add automated test on PR

#76 HarryHung closed 1 year ago
0
Display correct version information

#75 HarryHung closed 1 year ago
1
Fix iteration over None

#74 Lfulcrum closed 1 year ago
1
TypeError: argument of type 'NoneType' is not iterable

#73 HarryHung closed 1 year ago
5
Swiss_NT

#72 tauqeer9 opened 1 year ago
1
CVE-2007-4559 Patch

#71 TrellixVulnTeam opened 1 year ago
0
Job runs for 17+ hours without completion

#70 emmadoughty opened 1 year ago
0
Names for forwards and reverse reads does not match. Cannot continue

#69 kdyoung100 opened 1 year ago
1
let tempfile determine temp dir location

#68 rpetit3 opened 2 years ago
0
Error:

#67 lexleong closed 2 years ago
1
Seroba test error while installed with conda

#66 sreerampeela opened 2 years ago
0
serotyping from assemblies as input

#65 abrozzi opened 2 years ago
3
Hi..any suggestions on how this error was resolved for you?

#64 sreerampeela opened 2 years ago
1
Conda install 'createDBs' and 'getPneumocat' errors

#63 rpetit3 opened 2 years ago
1
latest build on docker hub is non functional

#62 cimendes opened 2 years ago
0
Dependencies issues when using seroba through conda

#61 AleSR13 opened 3 years ago
7
Can't build the ariba database

#60 wmiellet closed 2 years ago
1
biopython issue!

#59 bhclement opened 3 years ago
0
Got an error massage through docker with Ubuntu20.04 LTS

#58 snakano0527 closed 3 years ago
1
Default for runSerotyping coverage not being set correctly

#57 AdmiralenOla opened 3 years ago
1
removed unused import biopython.Alphabet

#56 gindar closed 3 years ago
1
11A/11C Misidentification

#55 garfinjm closed 3 years ago
4
gzip: No such file or directory

#54 km-bit closed 3 years ago
3
KeyError:'24B'

#53 km-bit opened 4 years ago
3
Remove pathogen informatics email from page

#52 kathryn1995 closed 4 years ago
0
Typo in docs

#51 tseemann closed 4 years ago
0
Make a git tag for 1.0.2 ?

#50 tseemann closed 4 years ago
2
Bug fix due to ariba --max_noncoding_length parameter

#49 eppinglen closed 4 years ago
1
"Bash Run_nucmer.sh" Error

#48 abcdtree closed 4 years ago
3
The "cd_cluster.tsv" created recently is different from the previous one

#47 abcdtree closed 4 years ago
4
nucmer dependency error

#46 jacorvar closed 4 years ago
1
seroba stopping signal recieved 28

#45 varunshamanna closed 4 years ago
3
No detailed output file

#44 andersgs opened 5 years ago
2
After kmc, error "Stopping! Signal received: 13"

#43 tseemann opened 5 years ago
2
Names for forwards and reverse reads does not match. Cannot continue

#42 tseemann opened 5 years ago
10
Pass --coverage through to the run function

#41 antunderwood closed 3 years ago
0
Increase version number

#40 puethe closed 5 years ago
0
small update to README

#39 antunderwood closed 5 years ago
0
remove need for trailing slash in DB path

#38 antunderwood closed 5 years ago
0
Can't build DB? False | ariba prepare_ref | no such file

#37 tseemann opened 5 years ago
4
YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated,

#36 tseemann opened 5 years ago
0
error

#35 bhclement closed 5 years ago
1
install from source

#34 jacorvar opened 5 years ago
1
Empty summary.tsv file

#33 pneumowidow closed 5 years ago
2
Include tests in README

#32 ssjunnebo closed 5 years ago
0
generate report

#31 ssjunnebo closed 5 years ago
0
add to codecov

#30 ssjunnebo closed 5 years ago
0
fix typo in badge

#29 ssjunnebo closed 6 years ago
0