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Hi I would like to reproduce some of the results from Raw data, however, I could
not get the `2nd-seq data` from the example dataset
I only found the fastq files for 1st-seq on https://deepblue.li…
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The initial [proof of concept](https://github.com/single-cell-data/matrix-api#development-roadmap) of matrix-api will be complete by the end of March, 2022. The POC is being tested against a number …
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Hello,
When I tried to run Giotto case to DLPFC, I met a problem: eva package couldn't be installed correctly.
I wonder know how you solve it, it's very important to me.
Thanks very much !
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Hi,
I am running Giotto-tda version 0.5.1.
I run the mapper code on some data that I had using filter_func = umap.UMAP which runs fine producing the plot_static_mapper_graph
My problem is this, wh…
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**Describe the bug**
I've created a program to train the Resnet50 model on the Caltech256 dataset using the Pytorch API and wanted to convert it to Deepspeed to hopefully take advantage of my 2 GPUs …
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Hi Giotto team, thanks for developing such an amazing tool for spatial data. I would like to use it to analyse the ligand receptor interaction but I could not install it properly. I will be grateful i…
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`runDWLSDeconv` takes as input a DWLS sign_matrix, imported from an annotated single-cell data experiment. According to my understanding, it then compares that to the **normalized expression data** fr…
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Hello,
I'm trying to use the function spatCellCellcom following the tutorial provided on seqFISH data. However, I obtain the following error. Has anyone run into a similar issue and could potential…
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I observed that when using group_by slot in the dimPlot2D() function, the ggplot2 plot that comes out is completely blank.
I then checked the source code and found a possible error in https://gith…
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Hi,
I used the Giotto docker image and encountered an error when doing doLeidenCluster():
>Fatal error at src/core/vector.c:483 : Assertion failed: v->stor_begin != NULL
What could be the rea…