single-cell-data SOMA issues

single-cell-data / SOMA

A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.

MIT License

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issues

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Type-check Pandas code and require newer pyarrow.

#201 thetorpedodog closed 2 weeks ago
1
Python spec for geometry dataframe

#200 jp-dark opened 3 weeks ago
1
Add first pass at obs/var to scene implementation

#199 jp-dark closed 2 weeks ago
1
Small modifications to the spatial layout

#198 jp-dark closed 3 weeks ago
0
typo fixes

#197 ryan-williams opened 1 month ago
0
Proposed update to the spatial additions

#196 jp-dark closed 1 month ago
4
(WIP) Add spatial support to a standard ExperimentAxisQuery

#195 jp-dark closed 1 month ago
1
Allow `obs_query`/`var_query=None` syntax

#194 johnkerl closed 2 months ago
0
Drop Python 3.7 support

#193 johnkerl closed 2 months ago
0
Bump scipy from 1.7.3 to 1.11.1 in /python-spec

#192 dependabot[bot] opened 2 months ago
0
[Feature Request] `to_arrow` support on AccumulatedCSR

#191 mdylan2 opened 2 months ago
0
Remove optional keyword args from `IndexLike.get_indexer`

#190 jp-dark closed 3 months ago
0
[python] Use ` _index_factory` in `AxisIndexer` class

#189 jp-dark closed 3 months ago
1
Bump black from 24.2.0 to 24.3.0 in /python-spec

#188 dependabot[bot] opened 3 months ago
0
Add `pa.ChunkedArray` to `SparseNDCoord` type

#187 ryan-williams closed 3 months ago
0
Support Python 3.12

#186 johnkerl closed 4 months ago
14
Prevent deadlocks in EagerIterators by making prefetch optional.

#185 thetorpedodog closed 5 months ago
0
ExperimentAxisQuery uses the thread pool from ContextBase

#184 ebezzi closed 4 months ago
2
Add `_Axis.getattr_from` and `_Axis.getitem_from`.

#183 thetorpedodog closed 7 months ago
1
Update pyarrow dependency

#182 johnkerl closed 7 months ago
2
Allow overriding of CSR accumulators with an `IndexLike`

#181 thetorpedodog closed 6 months ago
4
Bump pyarrow from 12.0.1 to 14.0.1 in /python-spec

#180 dependabot[bot] closed 7 months ago
1
Add obsm, etc to ExperimentAxisQuery

#179 ebezzi closed 7 months ago
0
Provide obsm/varm from ExperimentAxisQuery, as obsp/varp

#178 johnkerl closed 7 months ago
1
`ExperimentAxisQuery._read()` and `ExperimentAxisQuery.to_anndata()` should read and export, respectively, `obsm` `varm` `obsp` and `varp`.

#177 pablo-gar closed 6 months ago
1
[python/ci] Test matrix should include Python 3.11

#176 bkmartinjr closed 3 months ago
3
Add a note about why the fields of Slice are `@property`s.

#175 thetorpedodog closed 9 months ago
0
[python] Expose AxisQuery and fast csr to tiledbsoma to use C++ reindexer

#174 beroy closed 8 months ago
0
Update CI-related stuff to new versions.

#173 thetorpedodog closed 9 months ago
1
Cpp reindexer overrides

#172 beroy closed 9 months ago
1
tt

#171 beroy opened 10 months ago
1
test

#170 beroy closed 10 months ago
0
[python] Add parameters to `ExperimentAxis` query methods

#169 ebezzi closed 11 months ago
0
Bump scipy from 1.7.3 to 1.10.0 in /python-spec

#168 dependabot[bot] closed 9 months ago
2
[python] Update lifecycle tags

#167 bkmartinjr closed 1 year ago
0
Update `PlatformConfig` to allow impl-specific types

#166 thetorpedodog closed 1 year ago
0
Allow impl-specific `platform_config` values

#165 thetorpedodog closed 1 year ago
1
RFC on `soma_joinid`: identifier or index?

#164 mlin opened 1 year ago
2
Add pre-commit check to GitHub workflows

#163 thetorpedodog closed 1 year ago
0
SOMA Profiler RFCs

#162 beroy opened 1 year ago
8
Add initial directory and README for SOMA RFCs/design docs.

#161 maniarathi closed 1 year ago
0
Specify minimum version for `typing-extensions` dependency

#160 johnkerl closed 1 year ago
0
SOMA datasets compatibility

#159 royassis closed 1 year ago
1
Allow `obsm` and `varm` to be stored sparsely

#158 johnkerl closed 1 year ago
3
Add top-level exports for `Experiment` and `Measurement`

#157 thetorpedodog closed 1 year ago
0
Name change for CZ cell census

#156 bkmartinjr closed 1 year ago
0
[docs] More doc-styling

#155 johnkerl closed 1 year ago
0
[python] More lifecycle-experimental and doc-link updates

#154 johnkerl closed 1 year ago
0
[python] Add more lifecycle-experimental indicators to docstrings

#153 johnkerl closed 1 year ago
1
[python] Also convert query docstrings to Google format

#152 thetorpedodog closed 1 year ago
0