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single-cell-data
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SOMA
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
MIT License
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[python] Convert docstrings to Google style
#151
thetorpedodog
closed
1 year ago
4
[python] Don't use `TypeVar` when defining coordinate types
#150
thetorpedodog
closed
1 year ago
0
[python] Change collection child `type` to `kind` name
#149
thetorpedodog
closed
1 year ago
0
Support value filters in `NDArray` read operations
#148
atolopko-czi
opened
1 year ago
0
Abstract spec: Factor `SOMAExperiment` and `SOMAMeasurement` into separate sections
#147
atolopko-czi
opened
1 year ago
0
[python] Trivial doc-neatens in prep for web publishing
#146
johnkerl
closed
1 year ago
1
API spec-compliance fixes
#145
atolopko-czi
closed
1 year ago
3
[python] Add lifecycle maturity tags
#144
bkmartinjr
closed
1 year ago
0
[python] Explicit shaping for `DataFrame`
#143
johnkerl
closed
1 year ago
1
Expand dataframe-indexing type-lists
#142
johnkerl
opened
1 year ago
0
[python] Add `bool` to supported types and improve type specification
#141
thetorpedodog
closed
1 year ago
0
[python[ Use scalar timestamp types in Sequence and Slice
#140
thetorpedodog
closed
1 year ago
0
[python] Add support for timestamp types in axis query
#139
johnkerl
closed
1 year ago
0
[python] Add support for floats in axis query
#138
thetorpedodog
closed
1 year ago
0
[python] Add `exists` method to `SOMAObject` base class
#137
thetorpedodog
closed
1 year ago
0
[python] Make `()` the default value for `AxisQuery.coords`
#136
thetorpedodog
closed
1 year ago
0
[python] Re-enable isort via ruff; fix `MANIFEST.in`
#135
thetorpedodog
closed
1 year ago
0
Add pre-commit hook for `prettier` and format most files
#134
thetorpedodog
closed
1 year ago
0
Update a `Measurement` section in the spec
#133
johnkerl
closed
1 year ago
0
Add a CI rule to enforce `prettier` on `*.md` files
#132
johnkerl
opened
1 year ago
0
[python] Mutable-X mods, and explicit shaping of `SparseNDArray`
#131
johnkerl
closed
1 year ago
3
[python] Correctly specify the pip cache in the Github workflow
#130
thetorpedodog
closed
1 year ago
0
[python] Remove the `Comparable` protocol
#129
thetorpedodog
closed
1 year ago
0
[python] Make `Slice` protocol not `runtime_checkable`
#128
thetorpedodog
closed
1 year ago
2
Make backticks et al. consistent in the abstract spec
#127
johnkerl
closed
1 year ago
6
[python] Make `is_nonstringy_sequence` available in `types`
#126
thetorpedodog
closed
1 year ago
0
Add new supported types and improve precision of coordinates
#125
thetorpedodog
closed
1 year ago
0
Clarify non-negative `soma_joinid` in docstring and spec
#124
johnkerl
closed
1 year ago
0
[python] Enable chaining on certain write methods
#123
thetorpedodog
closed
1 year ago
0
Consider RFC2119 conventions for the SOMA spec
#122
johnkerl
opened
1 year ago
1
Clarify/implement forbiddenness of negative `soma_joinid` in the spec
#121
johnkerl
closed
1 year ago
3
Be consistent with backticks et al. in the SOMA spec
#120
johnkerl
closed
1 year ago
0
[python] Add missing lifecycle methods and expand docstrings
#119
thetorpedodog
closed
1 year ago
0
[spec] Specify object lifecycle and related operations
#118
thetorpedodog
closed
1 year ago
3
Upgrade to mypy v1.0.0 and simplify pre-commit setup
#117
thetorpedodog
closed
1 year ago
1
Export `AxisColumnNames`
#116
johnkerl
closed
1 year ago
0
Rework and enhance type hierarchy and generics
#115
thetorpedodog
closed
1 year ago
0
Add support for str and bytes in AxisQuery
#114
thetorpedodog
closed
1 year ago
0
docs: Readme rewrite
#113
pablo-gar
closed
1 year ago
0
Update README
#112
pablo-gar
closed
1 year ago
0
Downsize images/SOMAExperiment.png
#111
johnkerl
closed
1 year ago
3
Update LICENSE to make the years the same
#110
maniarathi
closed
1 year ago
0
Pull "ephemeral" collections into their own module
#109
thetorpedodog
closed
1 year ago
1
Explicitly use object-identity–based equality for SOMA objects
#108
thetorpedodog
closed
1 year ago
0
Document stateful API design
#107
Shelnutt2
closed
1 year ago
0
Remove obs_ms and var_ms from images/SOMAExperiment.png
#106
johnkerl
closed
1 year ago
4
Make link to abstract spec absolute in README
#105
atolopko-czi
closed
1 year ago
0
[python] Fix `soma_type` on `SparseNDArray`
#104
thetorpedodog
closed
1 year ago
0
[python] Enhance type-checking configuration
#103
thetorpedodog
closed
1 year ago
0
Declare `soma_type` as a class var rather than a property
#102
thetorpedodog
closed
1 year ago
0
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