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single-cell-data
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SOMA
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
MIT License
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Downsize images/SOMAExperiment.png
#111
johnkerl
closed
1 year ago
3
Update LICENSE to make the years the same
#110
maniarathi
closed
1 year ago
0
Pull "ephemeral" collections into their own module
#109
thetorpedodog
closed
1 year ago
1
Explicitly use object-identity–based equality for SOMA objects
#108
thetorpedodog
closed
1 year ago
0
Document stateful API design
#107
Shelnutt2
closed
1 year ago
0
Remove obs_ms and var_ms from images/SOMAExperiment.png
#106
johnkerl
closed
1 year ago
4
Make link to abstract spec absolute in README
#105
atolopko-czi
closed
1 year ago
0
[python] Fix `soma_type` on `SparseNDArray`
#104
thetorpedodog
closed
1 year ago
0
[python] Enhance type-checking configuration
#103
thetorpedodog
closed
1 year ago
0
Declare `soma_type` as a class var rather than a property
#102
thetorpedodog
closed
1 year ago
0
Empty query results typing
#101
bkmartinjr
closed
1 year ago
2
Add `close` method and context-manager operations
#100
thetorpedodog
closed
1 year ago
0
Allow passing `None` to `Experiment.axis_query`.
#99
thetorpedodog
closed
1 year ago
1
[python] Also support `coords=None` in `ExperimentAxisQuery`
#98
johnkerl
closed
1 year ago
6
Make `coords` for reading DataFrame and SparseNDArray optional
#97
thetorpedodog
closed
1 year ago
1
Rework object-creation and collection-building protocols
#96
thetorpedodog
closed
1 year ago
1
Rework Experiment and Measurement to be mixins
#95
thetorpedodog
closed
1 year ago
0
Split apart experiment and measurement to break import cycle
#94
thetorpedodog
closed
1 year ago
1
Add `uri` property to base SOMA objects
#93
thetorpedodog
closed
1 year ago
0
[python] Make imports relative and shuffle privacy underscores around
#92
thetorpedodog
closed
1 year ago
0
Add ruff (a fast Python linter) to pre-commit
#91
thetorpedodog
closed
1 year ago
1
[python] Make ExperimentAxisQuery.indexer public
#90
bkmartinjr
closed
1 year ago
0
[python] Fix inconsistent handling of column_names in ExperimentAxisQuery.to_anndata
#89
bkmartinjr
closed
1 year ago
0
Create `add` method for base Collection type
#88
thetorpedodog
closed
1 year ago
0
Repo needs description
#87
bkmartinjr
closed
1 year ago
2
[scratch] Toanndata imports
#86
thetorpedodog
closed
1 year ago
0
Change NDArray ndims to ndim
#85
johnkerl
closed
1 year ago
0
Switch from `ndims` to `ndim`
#84
johnkerl
closed
1 year ago
0
[python] Fast CSR loading for `to_anndata`
#83
bkmartinjr
closed
1 year ago
3
Re-enable `pip install --editable`; add mypy pre-commit step.
#82
thetorpedodog
closed
1 year ago
0
Make all coordinates `coords` and add type annotations.
#81
thetorpedodog
closed
1 year ago
1
Move basic Python configuration to the root of the repo.
#80
thetorpedodog
closed
1 year ago
2
Add missing exported classes to somacore
#79
johnkerl
closed
1 year ago
1
Import implementation of `ExperimentAxisQuery`.
#78
thetorpedodog
closed
1 year ago
0
Update LICENSE
#77
ambrosejcarr
closed
1 year ago
0
Add `Experiment` base type and `AxisExperimentQuery`.
#76
thetorpedodog
closed
1 year ago
0
Add `Experiment` base type and `AxisExperimentQuery`.
#75
thetorpedodog
closed
1 year ago
0
Improve types for coordinate and result-order params.
#74
thetorpedodog
closed
1 year ago
0
Add mypy CI step
#73
thetorpedodog
closed
1 year ago
0
Add `py.typed` marker file for downstream type checking.
#72
thetorpedodog
closed
1 year ago
0
Create requirements.txt files for each version of Python.
#71
thetorpedodog
closed
1 year ago
0
Add a basic "ephemeral" SOMA collection.
#70
thetorpedodog
closed
1 year ago
0
Create a build/releaser for the Python somacore library.
#69
thetorpedodog
closed
1 year ago
0
Set up project versioning for PyPI upload.
#68
thetorpedodog
closed
1 year ago
2
Export ReadIter and SparseRead
#67
johnkerl
closed
1 year ago
0
Fix: Make SparseNDArray take sparse arrow types.
#66
thetorpedodog
closed
1 year ago
0
`somabase` is taken, so we’re `somacore` instead.
#65
thetorpedodog
closed
1 year ago
0
Update licensing information for PyPI publishing.
#64
thetorpedodog
closed
1 year ago
0
Spec should not contain obs_ms/var_ms
#63
bkmartinjr
closed
1 year ago
0
Update status
#62
johnkerl
closed
1 year ago
0
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