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single-cell-data
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SOMA
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
MIT License
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Set up project versioning for PyPI upload.
#68
thetorpedodog
closed
1 year ago
2
Export ReadIter and SparseRead
#67
johnkerl
closed
1 year ago
0
Fix: Make SparseNDArray take sparse arrow types.
#66
thetorpedodog
closed
1 year ago
0
`somabase` is taken, so we’re `somacore` instead.
#65
thetorpedodog
closed
1 year ago
0
Update licensing information for PyPI publishing.
#64
thetorpedodog
closed
1 year ago
0
Spec should not contain obs_ms/var_ms
#63
bkmartinjr
closed
1 year ago
0
Update status
#62
johnkerl
closed
1 year ago
0
Add SOMADataFrame count accessor
#61
johnkerl
closed
1 year ago
1
Add tools to create simple composed types and implement Measurement
#60
thetorpedodog
closed
1 year ago
0
Shorten up constant declarations with `Final`.
#59
thetorpedodog
closed
1 year ago
0
python: Add basis of data storage types
#58
thetorpedodog
closed
1 year ago
0
Add pre-commit rules for the Python implementation.
#57
thetorpedodog
closed
1 year ago
0
python: Build out base data storage ABCs.
#56
thetorpedodog
closed
1 year ago
9
NdArray → NDArray
#55
thetorpedodog
closed
1 year ago
1
Describe `context` field and separate out common operations
#54
thetorpedodog
closed
1 year ago
2
Specify semantics of index-by-empty-list
#53
johnkerl
closed
1 year ago
0
Specify double inclusivity for slices
#52
johnkerl
closed
1 year ago
2
Clarify inclusivity of slice-indexing
#51
johnkerl
closed
1 year ago
3
Refine lifecycle labels
#50
aaronwolen
closed
1 year ago
0
Remove SOMADataFrame; rename SOMAIndexedDataFrame to SOMADataframe
#49
johnkerl
closed
1 year ago
1
Baseline of proposal for durable/ephemeral and everything else
#48
thetorpedodog
closed
1 year ago
8
Add lifecycle stages section
#47
aaronwolen
closed
1 year ago
4
Add basic description of `platform_config`.
#46
thetorpedodog
closed
1 year ago
1
X arrays can only be sparse
#45
johnkerl
closed
1 year ago
2
Stateful/stateless API proposal
#44
johnkerl
closed
1 year ago
12
Simple context building on declarative platform config
#43
johnkerl
closed
1 year ago
3
Rename `type` getter to `soma_type`.
#42
thetorpedodog
closed
1 year ago
1
Make create/delete/exists operations on SOMA types class methods?
#41
thetorpedodog
closed
1 year ago
4
incorporate discussion from 20221007 design review meeting
#40
bkmartinjr
closed
1 year ago
0
Add concrete classes and enums for options.
#39
thetorpedodog
closed
1 year ago
1
Add the basic SOMA Object and Collection types.
#38
thetorpedodog
closed
1 year ago
1
Finalize some infrastructure stuff for the specification.
#37
thetorpedodog
closed
1 year ago
0
Add the very basic skeleton where the Python spec will go.
#36
thetorpedodog
closed
1 year ago
1
simplification of SOMADenseNdArray read and write interface
#35
bkmartinjr
closed
1 year ago
0
Abstract spec refinement -- tracking issue
#34
bkmartinjr
opened
1 year ago
2
clarify get nnz behavior for SOMASparseNdArray
#33
bkmartinjr
closed
1 year ago
0
design discussions
#32
bkmartinjr
closed
1 year ago
0
Remove spec
#31
ambrosejcarr
closed
2 years ago
0
Add a title to the README
#30
maniarathi
closed
2 years ago
0
Simplified README
#29
maniarathi
closed
2 years ago
0
Minor edits: sc_group -> soma, whitespace, punctuation, etc.
#28
johnkerl
closed
2 years ago
10
Rename `sc_group` and `sc_dataset` to `soma` and `soma_collection`
#27
ambrosejcarr
closed
2 years ago
1
Linking to lower-level data structures (molecule information)
#24
ambrosejcarr
closed
1 year ago
2
var for obsm
#23
joshua-d-campbell
closed
1 year ago
1
Naming conventions
#22
mtmorgan
closed
1 year ago
1
Alignment with FOM schema
#21
joshua-d-campbell
closed
1 year ago
2
Consolidate data model description and notes
#20
aaronwolen
closed
2 years ago
0
Condense specification summary and matrix.png description
#19
ambrosejcarr
closed
2 years ago
0
Data types
#18
ivirshup
closed
1 year ago
3
Suggestion re introducing sc_group vs sc_dataset
#17
falexwolf
closed
2 years ago
3
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