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single-cell-data
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SOMA
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
MIT License
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Rename `[obs|var]_scene` -> `[obs|var]_spatial_presence`
#211
jp-dark
closed
6 days ago
0
Prototype coordinate spaces and transformations
#210
jp-dark
opened
1 week ago
0
Correct category dtype check in `ExperimentAxisQuery`
#209
nguyenv
closed
2 weeks ago
1
Fix typo where `var` should be checked instead of `obs`
#208
jp-dark
closed
2 weeks ago
0
Update pre-commit linters and new lint errors
#207
jp-dark
closed
3 weeks ago
0
Prototype image collection
#206
jp-dark
closed
1 week ago
0
Correct formatting for `to_anndata` doc string
#205
nguyenv
closed
1 month ago
0
Drop unused categories in `ExperimentAxisQuery.to_anndata`
#204
nguyenv
closed
1 month ago
1
Use `Lifecycle: maturing` for query `obsm`/`varm`
#203
johnkerl
closed
1 month ago
0
Add the new `Scene` collection to the python-spec
#202
jp-dark
opened
1 month ago
0
Type-check Pandas code and require newer pyarrow.
#201
thetorpedodog
closed
2 months ago
1
Python spec for geometry dataframe
#200
jp-dark
closed
2 days ago
1
Add first pass at obs/var to scene implementation
#199
jp-dark
closed
2 months ago
1
Small modifications to the spatial layout
#198
jp-dark
closed
2 months ago
0
typo fixes
#197
ryan-williams
opened
3 months ago
0
Proposed update to the spatial additions
#196
jp-dark
closed
3 months ago
4
(WIP) Add spatial support to a standard ExperimentAxisQuery
#195
jp-dark
closed
2 months ago
1
Allow `obs_query`/`var_query=None` syntax
#194
johnkerl
closed
4 months ago
0
Drop Python 3.7 support
#193
johnkerl
closed
4 months ago
0
Bump scipy from 1.7.3 to 1.11.1 in /python-spec
#192
dependabot[bot]
opened
4 months ago
0
[Feature Request] `to_arrow` support on AccumulatedCSR
#191
mdylan2
opened
4 months ago
0
Remove optional keyword args from `IndexLike.get_indexer`
#190
jp-dark
closed
5 months ago
0
[python] Use ` _index_factory` in `AxisIndexer` class
#189
jp-dark
closed
5 months ago
1
Bump black from 24.2.0 to 24.3.0 in /python-spec
#188
dependabot[bot]
opened
5 months ago
0
Add `pa.ChunkedArray` to `SparseNDCoord` type
#187
ryan-williams
closed
5 months ago
0
Support Python 3.12
#186
johnkerl
closed
6 months ago
14
Prevent deadlocks in EagerIterators by making prefetch optional.
#185
thetorpedodog
closed
7 months ago
0
ExperimentAxisQuery uses the thread pool from ContextBase
#184
ebezzi
closed
6 months ago
2
Add `_Axis.getattr_from` and `_Axis.getitem_from`.
#183
thetorpedodog
closed
8 months ago
1
Update pyarrow dependency
#182
johnkerl
closed
9 months ago
2
Allow overriding of CSR accumulators with an `IndexLike`
#181
thetorpedodog
closed
7 months ago
4
Bump pyarrow from 12.0.1 to 14.0.1 in /python-spec
#180
dependabot[bot]
closed
9 months ago
1
Add obsm, etc to ExperimentAxisQuery
#179
ebezzi
closed
8 months ago
0
Provide obsm/varm from ExperimentAxisQuery, as obsp/varp
#178
johnkerl
closed
8 months ago
1
`ExperimentAxisQuery._read()` and `ExperimentAxisQuery.to_anndata()` should read and export, respectively, `obsm` `varm` `obsp` and `varp`.
#177
pablo-gar
closed
7 months ago
1
[python/ci] Test matrix should include Python 3.11
#176
bkmartinjr
closed
5 months ago
3
Add a note about why the fields of Slice are `@property`s.
#175
thetorpedodog
closed
10 months ago
0
[python] Expose AxisQuery and fast csr to tiledbsoma to use C++ reindexer
#174
beroy
closed
10 months ago
0
Update CI-related stuff to new versions.
#173
thetorpedodog
closed
11 months ago
1
Cpp reindexer overrides
#172
beroy
closed
10 months ago
1
tt
#171
beroy
opened
1 year ago
1
test
#170
beroy
closed
1 year ago
0
[python] Add parameters to `ExperimentAxis` query methods
#169
ebezzi
closed
1 year ago
0
Bump scipy from 1.7.3 to 1.10.0 in /python-spec
#168
dependabot[bot]
closed
11 months ago
2
[python] Update lifecycle tags
#167
bkmartinjr
closed
1 year ago
0
Update `PlatformConfig` to allow impl-specific types
#166
thetorpedodog
closed
1 year ago
0
Allow impl-specific `platform_config` values
#165
thetorpedodog
closed
1 year ago
1
RFC on `soma_joinid`: identifier or index?
#164
mlin
opened
1 year ago
2
Add pre-commit check to GitHub workflows
#163
thetorpedodog
closed
1 year ago
0
SOMA Profiler RFCs
#162
beroy
opened
1 year ago
8
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