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Hi,
I successfully installed GENOVA by
`remotes::install_github("robinweide/GENOVA")`
I then required the package with
`library("GENOVA")`
I also have the following message which I usually …
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Using version 2.2.1.1 on CentOS7, Python 3.7.9
I installed everything two days ago, and have used six modules so far, four work fine: hicConvertFormat, hicPlotMatrix, hicCompareMatrices, and hicFin…
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that the following requirements are met :**
- [X] Search whether this issue (or a similar issue) has been sol…
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Hi, I tried to color the TADs according to my TAD annotation (e.g. active, silent, PcG). But I can't see my given color in the output image. Can you please have a look at my input file, if the given f…
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Dear all
I want to plot normalised matrix data, but the following command does not appear to work.
`fancplot chr10:40mb-43mb --pdf-text-as-font -o AH-1_AH-2.pdf -p mirror -d 2mb AH-1-7-13.hic@50…
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Hi:
I have a small question. When I used hicPlotMatrix to generated Hi-C heatmap with multiple bigwig files (>=3). I found the Hi-C heatmap became flatten (oblong shape, not 1:1). Can I control …
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Dear all,
I have a minor question, could we use the corrected cool file in the downstream analysis but not the corrected h5 file, such as `hicPCA`, `hicFindTads` and so on? Thank you very much.
…
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Hi, I have successfully identified TADs in some samples of mine. Now I'm interested in understanding the insulation score on specific regions. I'm attaching an image that results from `computeMatrix` …
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Hello, I am trying to add custom content to my MultiQC reports, specifically, single cell RNA-seq knee plots. Every pre-made module works just fine and recognizes the files they need, but MultiQC does…
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I conda installed TADbit using the directions on your website and have been trying to run tadbit map and have been continuously running into the following error:
`ValueError: file has no sequences de…