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We'd ideally like to make all single cell SQLite files publicly available. As @shntnu noted to me in a separate email, the lab has a process in place to accomplish this, which is great!
To summariz…
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The handbook uses `mean` for [aggregating](https://github.com/broadinstitute/cytominer_scripts/blob/ea1f7ea9807867c4ceab06f5e7a45a2380e0a828/aggregate.R#L40-L45) (i.e. creating level 3) as well as for…
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an issue for collecting stats to report for august content generation sprint
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Hi,
We would like to download the dataset (ex. [LINCS L1000 CRISPR Perturbations (2021)](https://lincs-dcic.s3.amazonaws.com/LINCS-sigs-2021/gctx/cd-coefficient/xpr_coeff_mat.gctx))from SigCom LIN…
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### Model Name
ImageMol
### Model Description
Representation Learning Framework that utilizes molecule images for encoding molecular inputs as machine readable vectors for downstream tasks su…
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Hi,
How would I go about reducing LINCS search space to touchstone set of compounds (https://clue.io/connectopedia/the_touchstone_dataset). The idea is to cut down the drug signatures that are quer…
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The link is:
https://lincs-dcic.s3.amazonaws.com/LINCS-sigs-2021/means/cpr_mean_coeff_mat.tsv.gz
Should be:
https://lincs-dcic.s3.amazonaws.com/LINCS-sigs-2021/means/xpr_mean_coeff_mat.tsv.gz
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update aug 12
annotations to add
- [x] LINCS
- [x] PubChem
- [x] Glycan
- [x] DrugCentral
see #46 and #33
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I'd like to add some external links for the compounds but the ID field i…