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Hi,
I have MAF files from mice tumours, and I tried to extract mutational signatures from that.
The trinucleotideMatrix function does not recognise the BSgenome.Mmusculus.UCSC.mm10 genome.
Is…
SNRNS updated
5 years ago
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Hello,
In your simulation script, which can be found on your pmsignature_paper repo (https://github.com/friend1ws/pmsignature_paper/blob/master/analysis/simulation/script/subscript/repeatSimulation…
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I have uploaded 109 files trying to run mutational signatures analysis, but an error occurs and I cannot get the results. it seems that the server is very busy?
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Can Musica be used for analysis of Whole Exome Data.??
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I was wondering if anyone else would be interested in adding DNA Damage and Response (DDR) indicators as (perhaps optional) bcbio QC outputs. These indicators are of interest to pharma R&D in order to…
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Hello
I have put this shiny script together
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Hi,
Thank you for developing such a useful tool. I am trying to analyze mutation signatures using somatic data downloaded from TCGA in the maf format. I realized that the files were too loarge for…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/USCbiostats/HiLDA
Confirm the following by editin…
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Hi,
Not an issue with the code itself, but I was wondering how you went about generating your counts matrix input, and if it was straightforward to do so. I'm currently working with a set of known ce…