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When an omex archive is uploaded, it is saved as 1 object on s3, and a database entry is created with some properties of the file and its location (provided as a url).
This should be extended to all…
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---
id: tellurium
version: 2.2.1
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_tellurium/8f01250ad68a3137ed34a7e80dd928cd4d5c1d7d/biosimulators.json
specificationsPa…
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- [x] Add command for inline help for Docker images:
`docker run ghcr.io/biosimulators/tellurium:2.2.0 --help`
- [x] Expand command suggestions for Docker images and command-line programs
- [x]…
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- OMEX Meta guidelines: https://biosimulators.dev/conventions/metadata
- Complete example: https://github.com/biosimulators/Biosimulators_utils/blob/dev/tests/fixtures/omex-meta/biosimulations-with-f…
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---
id: copasi
version: 4.34.251
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/e65de13e8665fae8e4c62b8c3d14a4d00840bc8c/biosimulators.json
specificationsPatch…
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---
id: pysces
version: 1.0.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_PySCeS/630a87b9e26ba3f12e9d36949c7557eb22ea3d24/biosimulators.json
specificationsPatch:
…
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---
id: amici
version: 0.11.22
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_AMICI/9de8050fb3e3d65930b028079c917cdacf8d4e93/biosimulators.json
specificationsPatch:
…
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---
id: gillespy2
version: 1.6.6
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/1362b71185c553fcadb14ae12aecf134d0651229/biosimulators.json
specificationsPa…
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I have just tried to import the Gardener toggle switch SBML model from BioModels (BIOMD0000000507_url.xml) into SBML4Humans and receive the following error with a request to report it here. It is a cu…
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---
id: copasi
version: 4.34.251
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/52067989a0531402fa4ae6b1456c0e4418acdee4/biosimulators.json
specificationsPatch…