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hi, i was reading your work done in "automated analysis of CMR images", its great indeed. i am also working on multi organ segmentation, i have an issue in conversion of long axis images in short axis…
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It shall be great if scribbles work independently of previous model output.
Currently it depends on logits collected through previous segmentation action.
It will be ideal if we can make it work b…
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I've noticed that Cytokit segmentation performs poorly on some CODEX datasets. Is there a way to change a threshold that tells which nuclei are allowed to pass. Or maybe there are some other parameter…
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Hello,
I am using ANTs for an Atlas creation of MRI masks of organs around the thyroid. I have got a good enough result with 10 iterations using the following command:
`/antsMultivariateTemplat…
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Hi, Jun, perfect and selfless work, and admire you.
I hope that the paper will be published as soon as possible!
Can I ask you two questions?
Q1: in “4.2 Semi-supervised organ segmentation benchmar…
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Hi there,
Thank you so much for your awesome work!
I have one questions related to the training of the signed distance map described in "Shape-Aware Organ Segmentation by Predicting Signed Dista…
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Hi Fabian:
'In Dynamic Network adaptation, we perform downsampling until the feature maps are relatively small (minimum is
4x4(x4)) to ensure sufficient context aggregation.'
I adjusted the min…
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Hi!
First of all congratulations! SPATA2 seems like a very useful tool. In fact, I'm interested in performing a CNV analysis on my 10X Visium data. Here are some questions that I have:
1) What d…
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Thanks for your work！ I run the code with our own data for multiple organ segmentation, the results are much worse than those in your paper. May I send our preprocessed data to you to run for a fair …