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Here is the text for a GitHub issue based on the contents of the provided README file:
---
**Title: Issue with Running Bulk RNA-seq Pipeline on MSU HPCC**
**Description:**
I encountered an i…
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Hello,
Thank you for all the great tools coming from this team.
I gave Braker3 a shot, but am running into an error at the moment. I will report below how I installed Braker3, and how I used it…
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Hi,
I'm trying to run CTAT pipeline to annotate my variants, with singularity but I'm having this problem:
```
Missing path to CTAT_GENOME_LIB in $CTAT_GENOME_LIB
```
but I actually have the li…
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Create a new topic in docs to enable Genpipes users get started with 5.0 quickly with least hiccups.
Link it in the landing page banner prominently. Cross- Link it in user reference guide and other d…
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Hello,
I tried to run STAR_Fusion.
Alignment with STAR seems well running,
But there's an error while calling fusion.
I checked the file "Pipeliner.pm" but it doesn't work well.
The mem…
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Hi Mathew,
I'm finally ready to give it a go to your pipeline. I have a few questions to ask you first, some regarding the installation and some other to the usage.
Re installation:
1) Is the…
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Hi,
I wanted to create Trinotate sqlite database, but facing an issue while using the first Trinotate command.
Please help me in solving the issue and guide me what to do.
I am attaching the comman…
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Are there any guidelines on the memory consumption of createASVCF.sh? I've run out of memory even when allocating 150GB. I don't really know how to best tell if this is normal or if I'm doing somethin…
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When running the pipeline with a single sample you get the following error when running the Salmon step.
> Execution completed unsuccessfully!
>
> The exit status of the task that caused the wor…
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This would be great if the inbuilt notification feature of Nextflow (which I can see already added to the nf-tower, I'm receiving emails.) can be integrated with [Slack](https://slack.com/).