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@yfarjoun and I recently discovered the following artifact in 30 FFPE samples:
The artifact occurs in DNA transposons with sequence 5'[S1][ITR][transposase][ITR'][S2]3', where S1 and S2 are arbitra…
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Hi,
Thank you for maintaining this repository, it has been extremely useful.
I am working on detecting transposable element insertions in Drosophila melanogaster samples, which requires TE consensus…
ghost updated
6 years ago
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Use RepeatMasker to ID TEs from draft Oly genome.
Note Sean developed pipeline and ran on old version of genome...
https://genefish.wordpress.com/?s=%22transposable+elements%22
sr320 updated
6 years ago
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should be analytically solvable, check refs in SLAPenrich
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follow on from
https://github.com/pombase/curation/issues/1831
We should add
- [x] C-terminal protein lipidation
- [x] inositol phosphate metabolic process
(partly because these are in he…
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To get all protein coding genes, my student used the query builder
product type -> protein
Could we have some help-text or similar stating that this will retrieve all protein coding genes includin…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
alevin
**Describe the bug**
I am trying to use Alevin to quantify a single cell RNA-Seq 10x Genomics CHROMIUM …
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We still have dupliciate entries in the GO database, which makes analyses difficult
These 15 identifiers were found to be ambiguous: ATP6AP2 CALM1 EIF3F GABARAP HIST1H2AI HOXD4 IDS KLK9 MED17 MUC…
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### Setup
biopython==1.70
Python 2.7.12
### Description
Reading embl from repbase:
http://www.girinst.org/server/RepBase/protected/RepBase23.02.embl.tar.gz
Manually checked the file…