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I've been trying to make my bot spread creep across the map, however I've run into an issue with the
```python
loc = await self.find_placement(CREEPTUMORBURROWED, near, placement_step=1, max_distan…
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Thanks a lot for updating such a powerful tool continously
in the cnvkit docs, it recommend theta2, and give the command. but in fact the theta2 has someproblems and the author does not recommend usi…
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Hi, I have some questions while using the msisensor2, the description is "msi high: msi score >= 20%” in the offficial website (http://niulab.scgrid.cn/msisensor2/#services), while I also found that …
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Hi Ryan,
I've read your posts on using SVTyper to help with somatic variant filtering. You suggested only keeping variants that have a non-reference genotype in the tumor (GT != 0/0) and variants t…
mej54 updated
6 years ago
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Hi @faridrashidi,
I am sorry for the late reply.
I have added functions for finding normal and tumor cells in XClone BAF module (latest version via github installation).
And [XClone…
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Hi,
Thanks for the powerful tool to infer cancer subclones. I have two questions for this tool:
1, you recommended to use at leat 4 samples to perform the analysis. However, I only have three tum…
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Biosamples are normally from a tissue sample that can be named. This data should be represented as a named field of a Biosample message, i.e. `tissue_type`. I suppose one might use something like the …
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Hello @aroth85,
I'am using PyClone-VI to infer the clonal structure between samples from the same subject
My aim is to have a description of mutation gain/loss
as stated in the README file PyClo…
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### Need
As a clinical geneticist I would like to be able to use COSMIC signatures, which can identify signatures of for instance DNA-repair mutations, which would lend confidence to the impact of …