niu-lab msisensor2 issues

niu-lab / msisensor2

Microsatellite instability (MSI) detection for tumor only data.

GNU General Public License v3.0

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issues

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Clarification on -c option

#50 KDasu-OneCell closed 1 week ago
2
Mouse tumor sample

#49 wangyi837 opened 1 month ago
2
change font format

#48 Beifang closed 2 months ago
0
add NOTE for customized microsatellite site model trainning

#47 Beifang closed 2 months ago
0
add ruilin email

#46 Beifang closed 2 months ago
0
use gmail address

#45 Beifang closed 2 months ago
0
microsatellites list based on hg38 reference genome

#44 Beifang closed 2 months ago
1
Any plan to release ARM version

#43 yftang opened 4 months ago
3
Build models for custom panels

#42 mmnikolic opened 8 months ago
2
Questions on count distribution from *_dis files

#41 AlkaidWang opened 10 months ago
3
read count distribution vs. BAM depth

#40 AlkaidWang opened 1 year ago
1
mismatch with msisensor1 result

#39 lys1001s opened 1 year ago
1
-f option

#38 lys1001s opened 1 year ago
5
Inconsistent result when validating

#37 lys1001s closed 1 year ago
0
MSIsensor2 vs MSIsensorpro tumor only functionality

#36 gavin-oliver-xilis opened 1 year ago
2
Create version releases

#35 RachelDuffin opened 1 year ago
1
Cram input

#34 SusiJo opened 1 year ago
1
Issues cloning repo

#33 ytakemon opened 1 year ago
1
How many sites are required in "Total_Number_of_Sites" to be reliable?

#32 bio-rain opened 2 years ago
2
consult the multiplex PCR data with msisensor2

#31 Fuli0288 opened 2 years ago
0
models_hg38 does not contain my sites , how can i add

#30 jiangldu opened 2 years ago
1
Permissions issue

#29 biofer opened 2 years ago
0
inconsistent output between msisensor and msisensor2

#28 windtalker6 opened 2 years ago
4
How many Microsatellites (MS) included in a customized panel is accurate when analyzed by msisensor2?

#27 biofer closed 2 years ago
3
Can the model file add the non prefix 'chr' version or no-name-check of chr prefix?

#26 bucongfan opened 2 years ago
1
Minimum coverage of WGS?

#25 byemypast opened 2 years ago
1
tumor only model , number of sites with enough coverage: 0

#24 wyy1234-github opened 2 years ago
1
using .bam file hosted on AWS S3

#23 BastienNguyen closed 2 years ago
0
*msi_somatic file description

#22 wyy1234-github opened 2 years ago
6
WGS best practices

#21 yajass opened 2 years ago
2
Msisensor on WES-T vs WGS-C

#20 Ephedria opened 3 years ago
1
What is the mean by "discrimination_value_ML" in the somatic output file

#19 deb0612 opened 3 years ago
3
-d msisensor2_scan_result vs -M Model ?

#18 gudeqing closed 3 years ago
1
We have downloaded two version software in November 2019 and 2020 respectively.However,the results of tumor only from these two versions were inconsistent.Is it normal?

#17 biofer closed 1 year ago
0
get location for analysed sites

#16 ZKai0801 opened 3 years ago
2
Hello, I would like to ask a simple question.

#15 jhs1989 opened 3 years ago
1
It probably was caused by the chromosomes format in the input hg19 bam file. Please make sure the chromosomes in the input bam like: chr1, chr2 ... instead of 1,2...

#14 vlakhujani opened 4 years ago
0
Does msisensor2 requires duplicate marked basequality recalibrated BAM or the raw BAM?

#13 vlakhujani opened 4 years ago
3
Issues about the cfDNA result

#12 jsonProgram closed 4 years ago
2
Issues about the cfDNA

#11 jsonProgram closed 4 years ago
0
msisensor crashes with error "fail to load bam index"

#10 kmavrommatis opened 4 years ago
1
msisensor2 documentation

#9 kmavrommatis opened 4 years ago
1
msisensor2 requires write permission to the models directory

#8 kmavrommatis opened 4 years ago
1
building models for a panel

#7 asaki1986 opened 4 years ago
1
Does MSIsensor or MSIsensor2 work with tumor-only RNAseq data?

#6 audyavar opened 4 years ago
4
Program aborted

#5 dauss75 opened 4 years ago
5
Output problem

#4 xin8you opened 4 years ago
12
cutoff-question

#3 fengshuaisheng opened 4 years ago
4
Permissions issue?

#2 MikeWLloyd closed 2 years ago
4
Failed Creating DMatrix

#1 EgirardBioinfo opened 4 years ago
3