Roth-Lab pyclone-vi issues

Roth-Lab / pyclone-vi

Fast method for inferring cancer clonal population structure from SNV data.

GNU General Public License v3.0

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issues

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Is there a dataset of TCGA pyclone-vi analysis result?

#43 ipstone opened 4 days ago
0
Creating Pyclone-VI input file from ASCAT and Strelka2 tool outputs

#42 sreerampeela opened 1 month ago
0
Install pyclone-vi on Galaxy Europe

#41 bdartigues opened 4 months ago
0
explain major and minor cn for pyclone input

#40 endertial opened 5 months ago
2
AttributeError: module 'numpy' has no attribute 'math'. Did you mean: 'emath'?

#39 endertial opened 5 months ago
3
Non-integer copy numbers

#38 Pranav-Garg opened 6 months ago
0
input data query

#37 bagieutopia opened 6 months ago
0
Error while running sub-command `fit`

#36 AntoniaChroni opened 1 year ago
3
How can one tell from the results whether a mutation is clonal or not?

#35 THT-sleepy opened 1 year ago
0
too less clones in results

#34 songmingl opened 1 year ago
0
Minimum number of mutations to use as input?

#33 THT-sleepy closed 1 year ago
5
Error in running example file, how to solve this error?

#32 parth2608 opened 1 year ago
0
Mutation IDs do not get loaded

#31 RadkaP closed 1 year ago
0
Questions about the calculation of CCF

#30 huerqiang opened 1 year ago
0
ValueError: need at least one array to stack

#29 RadkaP closed 1 year ago
0
Please add numpy version to requirements.txt

#28 rabiafidan opened 1 year ago
1
Pre-processing query

#27 seedgeorge opened 1 year ago
2
mutations with no data in some samples

#26 ZWael opened 1 year ago
5
error in np.sqrt(var)

#25 jsha129 closed 2 years ago
0
installation problem!

#24 Golnazthr closed 2 years ago
0
Cluster assignment probability filtering

#23 rpensch opened 2 years ago
1
Data loading issue

#22 mda-hillmanlab opened 2 years ago
4
A Type Error while running pyclone-vi fit

#21 dsagar18 closed 2 years ago
1
Extracting additional model parameters

#20 wir963 closed 2 years ago
2
running Pyclone-VI with total copy number

#19 bhinderb opened 3 years ago
2
Interpretation of the results

#18 YanaVassileva opened 3 years ago
1
Subclonal copy number of segment overlapping mutation

#17 underbais opened 3 years ago
0
Interpret resulting information

#16 Antioxidantcoco opened 3 years ago
0
installation issue

#15 Subhayan18 opened 3 years ago
4
Error if samples don't contain overlapping mutation

#14 willemdek11 closed 3 years ago
4
Update setup.py to match version

#13 willemdek11 closed 3 years ago
1
Odd errors in larger data sets?

#12 vortexing opened 3 years ago
1
Beta-binomial vs binomial for WGS 70x data

#11 TnakaNY closed 3 years ago
2
jitclass removed from numba 0.52.0

#10 fizwit closed 3 years ago
3
How do I get variant_allele_frequency?

#9 TnakaNY closed 3 years ago
3
How to prepare input data from vcf/maf file and CNVcaller output

#8 TnakaNY closed 3 years ago
2
AttributeError: module 'numba' has no attribute 'jitclass'

#7 jchenpku closed 3 years ago
3
CCF estimation for minor_cn=0

#6 xliu-uth opened 4 years ago
1
RuntimeWarning on write-results-file, all cellular_prevalence = 1

#5 brucemoran closed 4 years ago
2
Updated import path for numba.experimental.jitclass

#4 mmyers1 closed 3 years ago
0
"cellular_prevalence_std" of some "cluster_id" are missing.

#3 b-niu opened 4 years ago
3
About the output.

#2 b-niu closed 4 years ago
2
About the mathematical principles and citations in papers

#1 b-niu closed 4 years ago
2