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Hello,
I want to run core gene analysis with Spine locally and also want to include gff file, I use -f for genome_files.txt which containing paths to fasta file and their coresponding gff files. It i…
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Hi @ArtRand,
I got this error when running a command that works on many of my other samples on `v0.4.1`:
```
thread '' panicked at src/genome_positions.rs:100:16:
range end index 110770 out of r…
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I just recently found out about miniprot and have been testing it out as an alternative to MetaEuk in my VEBA metagenomics workflow software suite (https://github.com/jolespin/veba). When I ran minip…
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Dear bcftools :
I attempted to use bcftools to generate haplotype sequences using the phased.vcf (from HiPhase), but the process was unsuccessful. Are there alternative solutions available? Below is …
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I get the following error:
```
usage: __main__.py [-h] [-o OUT] [-r READ] [-m] [-c] [-q q_lo q_hi] [--g_or_ln G_OR_LN] rmats_folder gtf_file genome
__main__.py: error: unrecognized arguments: --sp…
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Hi kcleal,
Very nice genome browser!
Do you have any plans for a gw API ? For example, IGV.js
It would be really helpful to have an api without heavy memory burdens.
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Hi,
I want to convert the Prodigal output to standard GFF3 using the command: convert_prodigal_to_gff3.py -i unit2_new_genome.prodigal.gff -o unit2_new_genome.prodigal.gff3
I obtain this error …
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Hi,
When I only use HiFi data to assemble the genome by hifiasm before ragtag, the max length of contigs is 91Mb. But the max length of the chr is usually 60Mb. I want to know it has erro or no.
…
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Cyanobacteria Synechocystis -> custom contamination
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New 31del-493E-1104L carrying recombinant likely between Unknown(not KP*)/KP.3.1.1 with breakpoint after 19722 ( all unsure in my view)
that gained further S:E702V and S:R102K
Query: G11283A, C1776…