-
Hi.
I am excited for the saveGiotto() function in new version 3.0, so I installed it today (3pm, 11/19/2022).
And I was following the tutorial of Cosmx (https://giottosuite.readthedocs.io/en/latest…
-
## Version **1.14.42** of [ccxt](https://github.com/ccxt/ccxt) was just published.
Branch
Build failing 🚨
Dependency
ccxt
…
-
stereo_go % runPCA(expression_values = 'scaled', feats_to_use = 'hvf')
"hvf" was found in the feats metadata information and will be used to select highly variable features
class of selected…
-
Hi @rdong08,
Thank you for sharing the code to run DWLS deconvolution! This is super helpful. I'm working through `Visium_Brain_spatialDWLS.Rmd` and had one question.
Could you please let me k…
-
In the Nanostring CosMx tutorial, the `createGiottoObjectSubcellular` function that is called in cell 3, is not exported from the Giotto@suite that is installed in the beginning.
[docs/source/subsect…
-
Dear Bastian and your team,
Thank you all for the this project!
I am trying to build the topological gin following the receipt of your graph filtration learning and topological GNN papers (Grea…
-
Dear Authors,
Thank you for reading my message.
I am using adjustGiottoMatrix to correct for batch correction and regressing covariate (nr_feats) storing The corrected matrix in custom slot …
-
**Submitting author:** @matteocao (Matteo Caorsi)
**Repository:** https://github.com/giotto-ai/giotto-deep
**Branch with paper.md** (empty if default branch): paper
**Version:** v0.0.3
**Editor:** @os…
-
I can't figure it out what CubicalCover(kind='balanced') does, any suggestions?
-
The filterGiotto command does not follow the filtering criteria given to it. For example, in the following code:
```
library(Giotto)
library(data.table)
library(magrittr)
library(ggplot2)
libr…