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Hi-
I'm attempting to remove doublets from my scATAC-seq data [largely following your vignette](https://bioconductor.org/packages/devel/bioc/vignettes/scDblFinder/inst/doc/scATAC.html), but it would …
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https://mp.weixin.qq.com/s/zUFbYe-QIjsg_n-JII2YkQ
ixxmu updated
9 months ago
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This is an issue template made by the developers of ArchR. You MUST follow these instructions.
Questions related to how to use ArchR or requests for new features should be posted in the Discussions…
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This is an issue template made by the developers of ArchR. You MUST follow these instructions.
Questions related to how to use ArchR or requests for new features should be posted in the Discussions…
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Not exactly a software bug, but it looks like the repo is inconsistent about what license is being used.
On the website:
and in the DESCRIPTION
https://github.com/GreenleafLab/ArchR/blob/…
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I hope to creating a zebrafish ArchRGenome, so I did it according to the tutorial, but I made a mistake when creating the arrow file,I don't know what the problem is, could you please tell me the reas…
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Hi,
Can you suggest a way to go from atac_fragments.tsv.gz and filtered_feature_bc_matrix.h5 files into FigR?
This is with respect to Multiome data obtained with 10XGenomics.
Should it be prec…
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Dear author,
I have noted that the script of cleaning the data and preparing neccessary objects is found in https://costalab.ukaachen.de/open_data/scMEGA/Fibroblast/01_prepare_data.html. However, …
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Hello,
Great software! I am running into a bit of trouble working with the resulting imputed matrix. Specifically, my output matrix is ~100 Gb in size, which is somewhat expected, however loading …
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https://github.com/GreenleafLab/ArchR/blob/c61b0645d1482f80dcc24e25fbd915128c1b2500/R/AllClasses.R#L723
The Rle vector will not go in any of the if condition and will be send to the unique(). This …