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plger
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scDblFinder
Methods for detecting doublets in single-cell sequencing data
https://plger.github.io/scDblFinder/
GNU General Public License v3.0
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High doublet rate?
#108
yesitsjess
closed
1 month ago
5
Where to run scDblFinder in SCT workflow
#107
shaln
opened
2 months ago
1
Wild Variability in doublet scores
#106
markddesimone
opened
3 months ago
2
SCTransform example in vignette not working
#105
JesseRop
closed
1 month ago
1
Removing genes from count matrix before doublet detection
#104
kiwipeel
opened
4 months ago
3
Multiple errors: samples argument and Matrix
#103
mainyanghr
closed
5 months ago
4
how to get layers info after running scDblFinder
#102
IrinaVKuznetsova
closed
4 months ago
2
fix typo in sample param description
#101
kew24
closed
5 months ago
1
Error running scDblFinder
#100
chungsai
closed
4 months ago
4
Error running scDblFinder
#99
dimitrisokolowskei
closed
5 months ago
7
How can I add results to back my original file
#98
karabicicim
closed
6 months ago
2
"did not converge" Error on cellbender3
#97
IrinaVKuznetsova
closed
5 months ago
8
Does ‘Size factors should be positive’ error matter?
#96
YiweiNiu
closed
7 months ago
4
error in scATAC
#95
LidiaML
closed
5 months ago
1
Compatibility between Seurat, matrix and scDblFinder versions
#94
hennion
closed
6 months ago
4
Ambient RNA Removal
#93
meaksu
closed
7 months ago
4
Unable to install scDblFinder
#92
CCGOGO12
closed
8 months ago
2
Unable to run scDblFinder - "as_cholmod_sparse" does not exist
#91
sunnlife1978
opened
9 months ago
5
Doublet filtering in Parse Biosciences data
#90
kaanokay
closed
8 months ago
6
Clarify recommended nFeatures/artificialDoublets for scATACseq doublet removal in vignette
#89
jeremymsimon
closed
9 months ago
2
non-interpretable error message when providing non-integer as nfeatures argument
#88
Fiona713
closed
10 months ago
1
Error running scDblFinder
#87
malonzm1
closed
10 months ago
3
Running scDblFinder before or after normalization?
#86
DHelix
closed
10 months ago
2
Fix vaeda link
#85
grst
closed
10 months ago
1
Unreasonably high doublets rate
#84
t-nol
closed
1 year ago
4
Error in as(counts(sce), "CsparseMatrix")
#83
akhst7
closed
1 year ago
1
scDblFinder error when using aggregateFeatures and knownDoublets
#82
dottercp
opened
1 year ago
2
Running into Grid Error when Running scDblFinder
#81
Sandman-1
closed
8 months ago
2
Request for clarification of dbr and dbr.sd in scDblFinder 1.15.1
#80
aghr
closed
1 year ago
4
Runing scDblFinder before and after removing low QC cells gives different results
#79
yeroslaviz
closed
1 year ago
1
Error in if (length(expected) > 1 && x > min(expected) && x < max(expected)) return(0): missing value where TRUE/FALSE needed
#78
twoneu
closed
1 year ago
9
Error when running library(scDblFinder) on jupyter through %%R
#77
ngvananh2508
closed
1 year ago
2
Filter ATAC before running scDblFinder
#76
ccruizm
closed
1 year ago
2
did not converge
#75
z5ouyang
closed
1 year ago
5
I'm having an issues with sctransform not sure
#74
zvan14
closed
1 year ago
1
error in serialize(data)
#73
wbvguo
closed
1 year ago
6
Installing scDblFinder with conda not working
#72
dimitrisokolowskei
closed
1 year ago
6
Return threshold in output?
#71
maryellenlynall
closed
1 year ago
4
scDblFinder - known doublets
#70
maryellenlynall
closed
1 year ago
6
Unreasonably high doublets rate
#69
zqun1
closed
1 year ago
6
Merging multiple samples with scATAC prior to scDblFinder
#68
rauldiul
closed
1 year ago
2
doublets mostly differ between scDblFinder and doubletFinder
#67
gianfilippo
closed
1 year ago
18
scDbliFinder.sample is different from the sample column specified in `scDblFinder` function `samples` column ?
#66
Yunuuuu
closed
1 year ago
17
Import default hyperparams from Xi and Vasilopoulos
#65
plger
closed
1 year ago
0
Optimal Hyperparameter
#64
xnnba1984
closed
1 year ago
0
Deprecated "dgcMatrix"
#63
ATpoint
closed
1 year ago
2
Doublet numbers still not reproduced even though I used BPPARAM and bpstart
#62
Moonju411
closed
1 year ago
2
How to find all features used in training
#61
XinyeZhao
closed
1 year ago
1
Error in installing scDblFinder: object ‘colBlockApply’ is not exported by 'namespace:beachmat'
#60
amber4mint
closed
1 year ago
5
Running scDblFinder deterministic and serial with the 'samples' parameter
#59
cwoehle
closed
2 years ago
3
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