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Hello,
I have been trying to run DWLS deconvolution on some visium spatial data, however I have been getting the following error:
> DWLS_matrix visium_kidney = runDWLSDeconv(gobject = visium_kid…
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@jiajic
I don't have the bandwidth to fully debug this, but I want to give you a heads up that the use of data.table::setalloccol breaks these classes for me on my fork that I brought up to upstre…
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Hi,
Thank you for your developing Giotto and kind tutorials.
I'm currently demonstrating tutorials and have a question.
The mouse Visium kidney tutorial part 7 suggested that we can add cell ty…
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_This is a re-post of the https://github.com/RubD/Giotto_site/issues/11 here on Giotto_site as suggested by [RubD](https://github.com/RubD)_
Hi, I found out that the even with R 4.2.0 and apple sil…
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Dear author,
firstly, When I set python_path = '/home/cuim/miniconda3/envs/R403/bin/python' and run instrs = createGiottoInstructions(save_dir = results_folder,save_plot = TRUE,show_plot = FALS…
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I think this is related to python=3.6 being unavailable in any channel for M1 arch. I also tried using my own conda environment. It returns an error and so cannot find the modules despite being instal…
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Hello,
I'm interested in using Giotto for my spatial proteome data.
Now I'm trying to follow your protocol (doi: 10.1002/cpz1.405) step by step using my proteome data.
The input expression data …
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hi, I ran into error during deconvolution and could not figure it out for now. could anyone help please? Thanks.
```
DWLS_matrix
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Dear authors,
Thank you fro reading my message,
I have encountered an Error in displaying the tissue image underneath for example clusters or gene expression. the plot is generated without any p…
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I'm trying to correct the negative probe value to suppress the background noise in CosMx dataset.
I calculated the mean count value of negative probe per cell and subtract the mean value from raw c…