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Does Masurca have a module to detect the biotin stuffer sequence in Nextera mate-pair libraries and split the reads? Does, "IMPORTANT! Do not use third party tools top pre-process the Illumina data b…
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I received the error message below during an assembly with Masurca 3.2.4. The file with the incorrect array type is present in the 7-CGW folder and the 8-consensus step appears to have run successfull…
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This looks great so far, but I believe that the macOS installation instructions need an update. As described [here](https://github.com/Homebrew/homebrew-science/issues/6365), homebrew/science is unfor…
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I'm wondering how robust Masurca is to restarting after getting killed during the assembly step. Basically, my cluster has a queue that is preemptable so jobs can be killed and restarted if a higher …
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Hi Aleksey,
thanks for the great program!
I've been testing MaSurCA with a few different genomes because we are evaluating which assembler will perform best for out data ( ~8-10x Nanopore, ~20-4…
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Dear Mr Zimin,
I'd like to compile Masurca on our server. I've followed all your steps, but once I run make, I receive the attached error message (
[error.txt](https://github.com/alekseyzimin/masu…
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Hi Jue,
I'm sorry to bother you once anain.
I found a evaluation [paper](https://www.ncbi.nlm.nih.gov/pubmed/?term=29112696) and it says (paragraph 11 of "Discussion"):
>...Wtdbg assemblies, wh…
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Popular or notable formulae can be migrated to [Homebrew/core](https://github.com/homebrew/homebrew-core).
Bioinformatics formulae can be migrated to [Brewsci/bio](https://github.com/brewsci/homebrew…
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```
executable=${PYPEFLOW_JOB_START_SCRIPT}
+ executable=/public/mskkk/Nematode/Mi/WuhanF4-1/01-assembly/falcon/3-unzip/2-htigs/chunk_000519F/run-Pda9cd060b80965.bash
timeout=${PYPEFLOW_JOB_START_T…
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Hi all,
I have three Hymenoptera assemblies I am working on with ~30X PacBio, and 50X PE and 40X MP Illumina for each. I generated hybrid assemblies with DBG2OLC and Masurca and an Illumina only ass…