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There is an issue in the spatial RNA-seq tutorial. If you try and run it on any data that is not your example dataset. That is loading from the output of spaceranger.
When you try and run the first…
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https://github.com/drivendataorg/visiomel-melanoma-runtime/blob/df507909360246bc5a8e0852dd2a08724e8c1a38/README.md?plain=1#L154
```(.env) johnchen@Johns-MacBook-Pro visiomel-melanoma-runtime % pyth…
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I have made a few minor modifications to the script for compatibility with AWS/S3/Sagemaker using CPU instead of GPU. Because the you cannot connect to gcs to get the tfrecord files from AWS, I downlo…
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Hi,
Thank you for this amazing pipeline! I am currently running it WES and RNA-seq data and I'm having trouble with running NeoFuse.
The content of command.log is as following:
```
INFO: Enviro…
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There's a new [release for intogen on 31th May](https://twitter.com/bbglab/status/1663932069926281216?s=46&t=8P0XPZTEhJc59dWjxAjJDg). Given how infrequently Intogen releases, we could assume the updat…
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@carsen-stringer, is there a guideline on the expected memory usage? I was following [this](https://www.10xgenomics.com/resources/analysis-guides/performing-3d-nucleus-segmentation-with-cellpose-and-g…
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Just using default motor-admin without any customizations:
My model that is missing:
```
class Matter < ApplicationRecord
include UniqueTokenOnCreate
unique_token_options(name: :reference, …
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https://mp.weixin.qq.com/s/_xVOBTJ0DkpxiIj03NY6TQ
ixxmu updated
8 months ago
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This query looks for BiologicalProcessOrActivity linked to a chemical:
```
{
"message": {
"query_graph": {
"edges": {
"e00": {
"sub…
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Could it be made robust against other packages breaking the display of the experiment list? It shows fine without tictoc loaded.
```r
library(curatedTCGAData)
melanoma