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Hi @hbarsnes @CarlosHorro
the galaxy guy again :)
I just ran with peptideshaker into a similar problem as with searchgui. The program writes some data in the home directory, which again does n…
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I'm finally getting back to testing MetaMorpheus via command line in Linux.
The instructions I originally had were for version 0.0.111.0:
mono MetaMorpheusCommandLine.exe -d mouse-10.xml -s Task1…
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Reported by @jjcarver
We got the latest version of ms-data-core-api (2.0.21) working on our cluster, but it seems the issue we were having (way back with version 2.0.6) has not been resolved yet. H…
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Hi,
is it possible to get the output files in one this openacces format?
mzIdentML
mzTab
Or is maybe a converter known for the mgf.out and pnovo.txt files?
Thanks,
HP
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Hi together,
I am using MS-GF+ on a regular basis, but lately I have encountered a problem when converting large mzid files (4.2GB) to tsv with the provided converter. I am using version 2017/01/27…
JB-MS updated
6 years ago
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Hello,
I discovered that some projects cause the parsing to hang indefinitely. This seems the case on my end for example for assay 42095.
Cheers,
Kenneth
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Dear PRIDE-Cluster,
I encouter the following issues attempting to install cluster-data-generation.
The following error occurs when running mvn clean (similar errors runs when running mvn install)…
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Sciex ProteinPilot exports `mzid`. For example [1] with many PSMs. The example file can be inspected with `ProteoIDViewer`. Conversion with `IDFileConverter` results in `idXML` [2] which contains no P…
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Running the msgf2pin converter:
`
msgf2pin -o output3.pin -v 5 -F uniprot_sprot.fasta,uniprot_sprot_decoy.fasta firsttest.mzid firsttest_decoy.mzid
`
Has the output:
> mmcdermott:percolator…
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Hello,
it seems like the mzidentML output from PeptideShaker can't be converted with `IDFileConverter` due to strings being used in value tags, I always get an error like the following:
```
Err…