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Dear Dr.Han,
I'm having troubles with what it seems to be related with R packages. When trying to run the pipeline I'm getting this warnings and some of the graphics on the output are strange.
`…
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Hello,
Spatial constraints in bacteria (e.g. localisation of components) are getting a lot of attention, since they affect drastically the performance of a circuit. Should SBOLv represent these?
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Hello, the genome size is 1.5Gb
017-06-08 13:28:43,230 - INFO - AGOUTI_DENOISE PROGRESS - Succeeded
2017-06-08 13:28:43,238 - INFO - AGOUTI_DENOISE PROGRESS - Denoise took in 27.59 min CPU time
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Hi Jiali,
I was running `TEMP_Absence.sh` and in the `*.absence.refined.bp.summary` file, and I found many entries that seems to contradict to each other. Many types of repeats were identified by R…
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Hi @arendsee, I used the example ty1 data in your package.
```search(ty1$syn$Saccharomyces_arboricola,ty1$gff)```
The score column in output is NA, and inbetween is FALSE.
I also tried to set the …
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I've been trying to run LTR_retriever on my data with the following command:
`LTR_retriever -genome c.fa -inharvest c.harvest.scn`
I'm using a freshly cloned version of LTR_retriever (as of 6/4/2017…
angwg updated
7 years ago
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Support creation of custom tracks based on keyword search / advanced search on the feature attributes, i.e. tracks showing transporters, transposons, etc.
Support the minimum functionality we have o…
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We've been getting started with an AnnotateBamWithUmis, GroupReadsByUmi and CallMolecularConsensusReads pipeline to consolidate UMI tagged input fastqs and a couple of conceptual questions and feature…
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EMBL file currently annotates each family with a deprecated FBgn ID. These should be updated to the current FBte ID nomenclature.
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Hi everyone,
I'm a bionformatics newbie and I'm trying to use jitterbug. I'm running the following command:
python jitterbug.py LIB17997_good_align_sorted.bam Thaps3_chromosomes_geneModels_FilteredMo…