svm-zhang AGOUTI issues

svm-zhang / AGOUTI

Annotated Genome Optimization Using Transcriptome Information

https://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0136-3

MIT License

20 stars 8 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

No joining-pairs found

#20 LemoAlex closed 4 years ago
6
No joining pairs found

#19 darencard closed 4 years ago
3
845 - ERROR - AGOUTI_GFF PROGRESS - Found zero genes

#18 mars1198 closed 3 years ago
2
agouti scaffold fails with error: local variable 'curIndex' referenced before assignment

#17 gdczoller closed 5 years ago
4
Error while Denoising joining pairs

#16 Arkhaan closed 6 years ago
1
Multiple bugs encountered

#15 pliang64 closed 7 years ago
2
A transposon issue

#14 andreyurch closed 4 years ago
0
KeyError when scaffold ID contains additional '_'

#13 andreyurch closed 7 years ago
18
Wrong decription

#12 andreyurch closed 7 years ago
2
zero joining-pairs when reading coordiante-sorted BAMs

#11 svm-zhang opened 7 years ago
0
Empty line in the GFF crashes AGOUTI

#10 svm-zhang closed 7 years ago
1
support of multiple bam files?

#9 scotty323 closed 7 years ago
11
Question regarding recommended contig lengths

#8 darencard closed 8 years ago
3
Error while recovering original scaffolding

#7 bananenbongo closed 8 years ago
14
Issue in get_attributes module in agouti_shred.py

#6 bananenbongo closed 8 years ago
4
Recover_untouched_sequences ValueError

#5 aihardin closed 8 years ago
3
Added backward compatibility with old git versions (vis-a-vis -C)

#4 YourePrettyGood closed 8 years ago
1
'gap' feature request

#3 TakashiKoyama closed 8 years ago
7
Start index must be 1 or larger; GFF is 1-based

#2 TakashiKoyama closed 8 years ago
13
fix email address typo

#1 chadburrus closed 8 years ago
0