bowhan piPipes issues - Githubissues

bowhan / piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

GNU General Public License v3.0

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issues

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modernized draw_ping_pong function

#40 alexfriman closed 2 months ago
4
install custom genome error

#39 ROund-code opened 1 year ago
0
piRNA plots python error

#38 rberrens opened 2 years ago
0
Unable to download the human genome from igenome

#37 sayamsmr opened 3 years ago
4
Error in which(x <= 10^floor(log10(x)) * nice)[[1]] : subscript out of bounds

#36 zhanglm07 opened 4 years ago
0
piPipes

#35 LliliansCalvo opened 4 years ago
0
Error:mapping to rRNA failed / Could not locate a Bowtie index corresponding to basename "1"

#34 Coayala closed 4 years ago
0
piPipes_smallRNA_bed2_to_bw.sh: line 32: 21799 Segmentation fault

#33 edridgedsouza opened 6 years ago
1
Include a modules file for cluster users

#32 edridgedsouza opened 6 years ago
0
piPipes_smallRNA_bed2_to_bw.sh: line 32: 73659 Segmentation fault

#31 YouCai626 opened 6 years ago
12
Solve error derived from too many levels of symbolic links

#30 kepbod opened 6 years ago
0
When installing genome, stuck in 'receiving incremental file list'

#29 avivdm opened 6 years ago
0
Segmentation Fault

#28 cellmem opened 6 years ago
0
Error: unable to find or generate fasta for the genome

#27 Shirleyyyyyy opened 6 years ago
1
Improve/refactor cmake

#26 bowhan closed 7 years ago
0
sRNA single-sample mode alignment output

#25 malloryfreeberg opened 7 years ago
0
Problems with R packages(ggplot2?)

#24 tarcisiofbr closed 7 years ago
3
major modification from wei wang for piPipes dm3 RNAseq data processing

#23 turningA opened 7 years ago
0
parameters in `/common/mm9/variables`

#22 dingailuma closed 7 years ago
1
Fix #20

#21 bowhan closed 7 years ago
0
Bug in piPipes_bed2_to_bedGraph

#20 yfu closed 7 years ago
1
biological replicates for smallRNA analysis

#19 bakerwm closed 7 years ago
1
Error: mapping to rRNA failed

#18 hemingwang opened 7 years ago
4
Latest version of the genomes (danRer10)

#17 naluru closed 8 years ago
1
Error while installing 'feather'

#16 samrus98 closed 8 years ago
2
problem with piPipes installation on OSx

#15 marinejpetit closed 8 years ago
2
Missing columns in *.transposon.sorted.unique.bigWig.summary

#14 blaiseli opened 8 years ago
2
gene_transposon_cluster_direct_mapping is absent from piPipes rna output

#13 blaiseli closed 8 years ago
3
Error in RCircos.Validate.Genomic.Data(genomic.data, plot.type)

#12 blaiseli opened 8 years ago
0
TRANSGENE_MAPPING_DIR not set in piPipes_GenomeSeq.sh

#11 blaiseli closed 9 years ago
1
bigWig in binary code

#10 DannyBerg closed 9 years ago
1
Strange name in piPipes chip2 example output

#9 blaiseli closed 9 years ago
1
`bwtool` oom-killed but no obviously report by `piPipes chip`

#8 blaiseli closed 9 years ago
3
Errors while installing R dependencies

#7 blaiseli closed 9 years ago
8
terminate called after throwing an instance of 'std::length_error'

#6 dianalow closed 9 years ago
1
Added -ignoreGroupsWithoutExons option

#5 yfu opened 9 years ago
0
Errors when launching piPipes small RNA

#4 iandry-rabe closed 9 years ago
1
Update piPipes_intersect_smallRNA_with_genomic_features.sh

#3 yfu closed 9 years ago
0
\x027 -> \x27

#2 yfu closed 9 years ago
2
Fix the buffer problem

#1 yfu closed 10 years ago
0