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Hi,
I am able to run the ShinyArchRUiO just fine on my local development server. However when I copy the entire ArchR project directory onto my production server and run the initialization, I get t…
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Hello, I am a user of ArchR for about a year now and have come across ChrAccR just by browsing the GreenleafLab GitHub page. I'm curious how ChrAccR plans to be advantageous in comparison to ArchR, wo…
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Dear Dr. J. Regner,
Hi! This article has great inspiration for our research. We are very interested in this article! Therefore, currently I am trying to reproduce the content of the article. But I e…
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**Attach your log file**
[ArchR-createArrows-643305bba49-Date-2023-07-06_Time-08-53-16.log](https://github.com/GreenleafLab/ArchR/files/11969682/ArchR-createArrows-643305bba49-Date-2023-07-06_Time-08…
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Dear @kaizhang, We have a data set where we are seeing very different embedding results on the UMAP for ArchR as compared to SnapATAC2. Any suggestions on how to make the two approaches comparable?
…
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Using the `CreateChromatinAssay` function with Seurat 5 loaded renders the following error
```
Error in .local(x, na.rm, dims, ...) : object 'R_sparse_marginsum' not found
```
Downgrading Seur…
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### Description of feature
hey,thanks your all do for this beautiful package!
i am a beginner,i have some scATAC-dataset from difference groups,
i want to try to do celltype Compositional analysi…
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Hello, Thank you to the people made ArchR !
I have a question for you.
If I have specific target peak range (ex. chr1:1010294-1020294), can I create a peakSet file for using my peak range list …
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**Attach your log file**
ArchR has a built-in logging functionality for all complex functions. You MUST attach your log file (indicated in the console output) to this issue. Just drag and drop it her…
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Log File:
[ArchR-addGeneIntegrationMatrix-dcc6b48f59a-Date-2023-05-31_Time-04-15-42.log](https://github.com/GreenleafLab/ArchR/files/11608646/ArchR-addGeneIntegrationMatrix-dcc6b48f59a-Date-2023-05-3…