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**Describe the bug**
Pipeline builder crashes when trying to preprocess a new functional dataset and a previously run functional dataset already exists in the output directory.
**To Repr…
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**Update metadata:**
https://docs.google.com/spreadsheets/d/1QCeAF4yQG4bhZSGPQwwVBj_XF7ADY_2mK5xivAIfHsc/edit#gid=1453488771
**Details of data(publication, GitHub):**
https://www.spatial-atlas.ne…
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Hi everyone,
I ran the tutorial of horizontal integration. Here is my question, the tutorial used processed data I assume: adata = sc.read_h5ad('data/mouse_anterior_posterior_brain_merged.h5ad'). I…
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Dear @cwmok
I sincerely appreciate your excellent work, but I have encountered several issues while reproducing this paper.
Firstly, regarding the number of iterations, I found that the iteration n…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Describe your proposed enhancement in detail.
I propose the addition of an optional cursor on interactive view…
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- [x] Explore cBioPortal
- [x] See what data is available
- [x] What is their license
- [x] How can we download the data
- [x] etc
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Look at https://github.com/brettliem/phaseprep and https://github.com/idevicente/Phase-based_denoising_pipeline
tsalo updated
3 weeks ago
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For some behavior only sessions, running `get_extended_trials()` provokes a somewhat inscrutable error from within `trials_processing.py`.
For example:
```
>>> from allensdk.brain_observatory.behavi…
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I was able to prepare files for the IBLenv GUI but then I run into issues with loading it in and I get these error messages:
(iblenv) C:\Users\Antara\int-brain-lab\iblapps\atlaselectrophysiology>py…
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I want to load some data from a `JSON` file which is stored in GitHub, the data is printed in Chrome's console as expected and as soon as is fetched but when I try to load it for the neural network wi…