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## 5/12/2019
### Alternative Species
Downloaded the other species data in the directory `/scratch/jpm73279/04.lncRNA/06.annotate_other_species_2020-05-11` using the script `submit_fastq_dump_downl…
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Remove extensions on BodySite (many profiles): unless these are specifically aligned with Clinical Genomics for GeneticSpecimen, none of the mCODE profiles go beyond specifying a value set for bodySit…
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We can read data from VCF Zarr files with #40.
Ultimately we will need to read data from VCF files directly.
https://github.com/brentp/cyvcf2 looks to be a good option for this purpose.
Under…
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**Data name:** Alignment reference
**Short description:** One or a set of reference molecular sequences, structures, or profiles used for alignment of genomic, transcriptomic, or proteomic exper…
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An example is currently live and may be viewed at https://genenetwork.org/gsearch?type=gene&terms=SULT1A1
Short version of error:
`(GeneNetwork error: u'INIA_MacFas_AMG_RMA_0110')
GeneNetwo…
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I believe the PR https://github.com/aces/Loris/pull/5398 possibly broke the logic of handling "genomic_browser_view_site" & "genomic_browser_view_allsites" permissions when accessing the genomic_brows…
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HI, I am trying to make the database from source using the make_databses.pl. But, I am confused about why there is a need to download the preformatted database file as shown in the make _databses.pl …
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Would be great if we can annotate this list:
```
PXD004732 -- ProteomeTools -- 104608
PXD000561 -- A draft map of the human proteome -- 97948
PXD002815 -- A human interactome in three quantitat…
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**Submitting author:** @TomKellyGenetics (S. Thomas Kelly)
**Repository:** https://github.com/TomKellyGenetics/graphsim
**Version:** v1.0.0-joss
**Editor:** @majensen
**Reviewer:** @rcannood, @corybru…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ccbiolab/svpluscnv
Confirm the following by editi…