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**Describe the issue**
Running PureCN on a sample fails with Detected overlapping gaps on chromosome , : INTERNAL ERROR: Detected overlapping gaps on chromosome 10 in argument gaps . Calls: runAbsolu…
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Hello,
I've been trying to use these notebooks, but I'm having trouble running them. Whenever I try to open one, it takes about 5 minutes to load, and then I get an error. Can anyone help me figure…
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The example plot for geom_smooth is not showing the error bars (https://www.plotnine.org/generated/plotnine.geoms.geom_smooth.html#plotnine.geoms.geom_smooth)
```
from plotnine import (
ggplo…
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```json
{
"$schema": "https://vega.github.io/schema/vega-lite/v4.json",
"data": {"url": "data/penguins_size.csv"},
"mark": "point",
"encoding": {
"x": {
"field": "body_mass_g"…
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I'm using the example data from the documentation.
In v1.6.0 - the file `chr20.germline.vcf` does not get generated from the germline calling step.
```
${path}/src/Monopogen.py germline -a ${pa…
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Summary of request: Add a new organization to ROR
Add record:
Name of organization: State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau
Website: http://skl.iswc.cas.cn
…
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Testers (validators) report that there are problems cloning and working with the ChoCo repository due to some naming conventions in the subfolders of `partitions`.
More specifically, these errors r…
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--Hi,
i can't detect short CNV. Is there a way to improve the detection ?
I use these parameters:
Rscript $PURECN/PureCN.R --out $OUTPUTS/$lib --tumor $OUTPUTS/${lib}"_recalibrated_coverage_lo…
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### Tips for a helpful feature request:
I would like to request that the trend lines drawn by geom_smooth or stat_smooth have an option to truncate the line when a standard error threshold is excee…
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https://mp.weixin.qq.com/s/AVP-UyCKb64CLEpounZ_rw