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As mentioned by @lars20070 and also experienced by me:
QTWebkit does not build with gcc5+ anymore because it optimizes out some code. There is a fix for QT5 ([here](https://codereview.qt-project.org/#…
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Hi:
Recent days, I'd like to find an efficient way to parse MzIdentML file, so I want to try MSFTBX. Unfortunately, I didn't find it on your tutorial page, but only the codes to parse pep.xml file…
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Last week @pavel-shliaha ask me to check whether a new neutral loss method for phosphopeptides is working as expected. Therefore it was important to find out which MS3 spectrum was triggered by which …
sgibb updated
6 years ago
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Hi:
When I parsing proBam files which were converted by proBAMconvert, I found some modification error. It lost the location detail, because all modifications I got were 1st site, such as _0-UNIMO…
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http://www.ebi.ac.uk/pride/help/archive/submission
PRIDE is the vehicle for getting new data into uniprot. PRIDE requires mzidentml as one of the inputs. i believe they (PRIDE) have a tool to valid…
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Hi:
When I converted one mzIdentML file to proBAM, I met one error as follow.
"ERROR:'ascii' codec can't encode characters in position 8-11: ordinal not in range(128)"
I wish you can fix it.
…
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Hi guys,
I tried to export a dataset in mzIdentML 1.2 format.
My datasets contains Phosphorylations on S, T and Y.
So I expect to have the scores values for these amino acids and at different pos…
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I have run into problems with the msgf2pin converter from version 3.01 on two systems, Mac OS X 10.11.6 and Ubuntu 14.04. In both cases, Percolator was installed from the release packages linked on ht…
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A new version of X! Tandem is out ("ALANINE"): http://www.thegpm.org/TANDEM/index.html
We should test it and possibly update the version used by OpenMS.
Also, X! Tandem supports mzML as input form…