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Getting this error in step 2, trying to run burden tests. REGENIE v3.2.1.gz
ERROR: annotation information could not be read. Perhaps check variant IDs matches those in the genotype file?
Th…
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Hi,
I have been able to estimate the beta-auto using summary statistics from pan-ukbb with the LD-reference provided in the ldpred2 paper. For the Celiac disease which is a binary phenotype, sign of…
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### What you did:
We want to use the ancestry classification tool to predict genetic ancestry of UKBB samples. (https://gnomad.broadinstitute.org/news/2021-09-using-the-gnomad-ancestry-principal-co…
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Action item:
We need to designate the location within the NeuroHub UK Biobank directory tree for the derived data:
We have tractoflow data that needs to go somewhere official, and most of the squa…
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Hi! I have a question about the `eddy_cuda` module... even though I requested the gpu module in `TACC`, I still fail to execute the `eddy_cuda`... I am wondering do I need to install any additional nv…
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Hi,
I'm trying to work with the imputed data from UK Biobank. I'm using the RStudio workbench through dnanexus (as data can't be downloaded). I keep running into errors with space to create the .bk …
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Hi scDRS team,
I am encountering a loess error when trying to run a subsampled, lognormalized h5ad file through `scdrds compute-score`:
> Call: scdrs compute-score \
> --h5ad-file ordovas_immun…
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New exome based sequencing data is available, which is going to be ingested into the OpenTarget Platform as disease/target evidence.
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Hi, I am trying to obtain risk scores for different traits for every individual in the UK Biobank.
The whole exome sequencing data we have looks like this:
```
- /s/raw/ukbiobank/WES_200K/ukb231…
Hoeze updated
2 years ago