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I get the following error when trying to run the PCoA (using any of the distance metrics)
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**Addition Description**
Right now if you have a column of unique ids (i.e. host_subject_id) that are integer valued but if you want to pass it in as a categorical type, qiime2 will throw an error …
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Dear, I do not know if related to (#7) but on a real-life dataset (analysed using DADA2, 551 ASVs over 96 samples), I am getting some unexpected output of constrained RCM ordination starting from a ph…
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Hi,
Is it necessary to uninstall emperor before installing empress?
I am not a plugin developer, just a ordinary user and I am wondering whether uninstalling emperor will affect display of pcoa or…
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**Describe the bug**
The Metaboscape 5.0 export format for the `msmsonly_featuretable` is different from the [example file](https://github.com/CCMS-UCSD/GNPSDocumentation/blob/master/docs/tutorials/A…
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OPM_OVERLY_PERMISSIVE_METHOD
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I have dug through the MEGAN manual a little to try to figure out if the PCA (PCoA) Sam made is based on a presence/absence matrix or on the number of reads for each taxon.
Short answer: I believe it…
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# When i install scikit-bio on 64bit windows with python27, there is an error occured, and i cannot solve it with google, so here i am. Below text is the output error of scikit-bio installation.
D…
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Hello, thanks for the package. I am struggling trying to find out which distance the package is using in clustering analysis? Usually, we need to specify the distance, but phylosmith has no option for…
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Do you have plans to generalize these methods to [principal coordinates analysis](http://scikit-bio.org/docs/0.5.4/generated/generated/skbio.stats.ordination.pcoa.html#:~:text=Principal%20Coordinate%2…