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Stand up a server with the RNA recompute data.
s3://cgl-rnaseq-recompute-fixed
Assemble metadata preparation for tcga and GTEX
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@nishill has kindly prepared a handful of RNA seq experiments from the E-GEUV project on the 1kgenomes server.
This issue is added in hopes of getting better coverage of the available RNA seq exper…
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Hi there,
I have a Seurat object with both RNA and ADT assay data.
Anyone has any input why `WhichCells()` failed to retrieve the cells using ADT markers?
```
DefaultAssay(gem_ID.list_MERG…
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Even when setting a dummy BIOPROJECT and giving a local file prefix Finder tries to download the RNA-Seq files from the NCBI
2021-03-04 11:49:45,178 - finder - INFO - Started processing data for …
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* Document the association of total genes and transcripts by tool
- [ ] star count
- [ ] htseq
- [ ] feature count
- [ ] salmon
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Hi I'm trying to run import-rna with raw read counts. The results are very different from that by targeted DNA seq. The samples for RNA seq vs. DNA seq are 99% same so they are supposed to generate si…
laopp updated
5 years ago
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**Reported by batchelorc on 2008-02-25 17:56 UTC**
Hello
(This is all a bit telegraphic.)
This is from October but I haven't got around to doing much about it so trackered so it doesn't evaporate ou…
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**Submitting author:** @SarahMaman (MAMAN Sarah)
**Repository:** https://github.com/Bios4Biol/intronSeeker
**Branch with paper.md** (empty if default branch): master
**Version:** v1.0.0
**Editor:** @k…
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### TASK
Currently, the build downloads are via the `builds/data_to_download.txt`, which is a list of URLs. While this will work for 90% of the existing data used, there are a few data provides tha…
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How can modified RNA sequences accurately obtain results through meltR.A, and how should the part NucAcid = c('RNA', 'CGAAAGGU', 'ACCUUUCG') be modified?